Non-Coding RNA Search

recc2805c_k1.y1

Sequence:


               
               CTTTGTATCCCCATCAGGTGGTTAGTTGAAGTATGCTTCAAAACTTATAGTACCAGAAAT
GTTACTACTTCCTGTAGCCACCCACTTCATGTTCTAATAGTAGGAATGAAAATAGAAACA
TAGCACAGATAAAGATGAGATTTAAAAGATAATAAGGGGTTTGGCTTATGACCTatggaa
tagacgtacttttccctgttctcactacatacaactgaaaaacttggacattatatatta
aacaaacataatatgactggaaaagaaaggtcatactggctagagctccagaggcctaag
gaatgacatagtggtaagtttcctagcttttctttttgcctcatatatcccagaattgca
gctgaagaagccagcaacttggaactaccaacgggcacagacctaaaaagcccAACAAAA
GCTATCTCTCTCTAGCCAAAAAATGAGCAAAAGGGCAGCCAACAAAACAAAAAATTCTTA
GAAAATAATCTTTCTACTATAGTTAACCACCACAGGAAAAAAAAACCCAAAAAAACTACA
GCCCCACCCCAATCTATTTCATCAAAGGTTGACTGGGAAGCCCGGATTTTCATCAGTCTA
TAACAAGGTGCCTCACTTGCCCATGAGGGGAGTGTCCAGAAACTGACTCTGAAACAAAAG
GCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGTATCCCCATCAGGTGGTTAGTTGAAGTATGCTTCAAAACTTATAGTACCAGAAAT
GTTACTACTTCCTGTAGCCACCCACTTCATGTTCTAATAGTAGGAATGAAAATAGAAACA
TAGCACAGATAAAGATGAGATTTAAAAGATAATAAGGGGTTTGGCTTATGACCTatggaa
tagacgtacttttccctgttctcactacatacaactgaaaaacttggacattatatatta
aacaaacataatatgactggaaaagaaaggtcatactggctagagctccagaggcctaag
gaatgacatagtggtaagtttcctagcttttctttttgcctcatatatcccagaattgca
gctgaagaagccagcaacttggaactaccaacgggcacagacctaaaaagcccAACAAAA
GCTATCTCTCTCTAGCCAAAAAATGAGCAAAAGGGCAGCCAACAAAACAAAAAATTCTTA
GAAAATAATCTTTCTACTATAGTTAACCACCACAGGAAAAAAAAACCCAAAAAAACTACA
GCCCCACCCCAATCTATTTCATCAAAGGTTGACTGGGAAGCCCGGATTTTCATCAGTCTA
TAACAAGGTGCCTCACTTGCCCATGAGGGGAGTGTCCAGAAACTGACTCTGAAACAAAAG
GCTGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               334-453, - strand, RNAz p=0.833722
               

               
               493-606, - strand, RNAz p=0.95554

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               334-453, - strand, RNAz p=0.833722
               

               
               493-606, - strand, RNAz p=0.95554

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               37-622, gnl|bosTau2|chr1 (31480481-31481063)
               

               
               37-622, gnl|canFam2|chr33 (27593265-27593597)
               

               
               37-622, gnl|dasNov1|scaffold_56517 (5160-5570)
               

               
               37-622, gnl|echTel1|scaffold_284535 (600-240)
               

               
               37-622, gnl|hg17|chr3 (122442394-122442799)
               

               
               37-622, gnl|Hg17|chr3 (122442405-122443068)
               

               
               37-622, gnl|loxAfr1|scaffold_98177 (4336-4747)
               

               
               37-622, gnl|panTro1|chr2 (124156875-124157280)
               

               
               37-622, gnl|rheMac2|chr2 (41245663-41246062)
               

               
               37-622, gnl|rn3|chr11 (65398575-65398838)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-622, gnl|bosTau2|chr1 (31480481-31481063)
               

               
               37-622, gnl|canFam2|chr33 (27593265-27593597)
               

               
               37-622, gnl|dasNov1|scaffold_56517 (5160-5570)
               

               
               37-622, gnl|echTel1|scaffold_284535 (600-240)
               

               
               37-622, gnl|hg17|chr3 (122442394-122442799)
               

               
               37-622, gnl|Hg17|chr3 (122442405-122443068)
               

               
               37-622, gnl|loxAfr1|scaffold_98177 (4336-4747)
               

               
               37-622, gnl|panTro1|chr2 (124156875-124157280)
               

               
               37-622, gnl|rheMac2|chr2 (41245663-41246062)
               

               
               37-622, gnl|rn3|chr11 (65398575-65398838)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	334-453, - strand, RNAz p=0.833722
	493-606, - strand, RNAz p=0.95554

	37-622, gnl\|bosTau2\|chr1 (31480481-31481063)
	37-622, gnl\|canFam2\|chr33 (27593265-27593597)
	37-622, gnl\|dasNov1\|scaffold_56517 (5160-5570)
	37-622, gnl\|echTel1\|scaffold_284535 (600-240)
	37-622, gnl\|hg17\|chr3 (122442394-122442799)
	37-622, gnl\|Hg17\|chr3 (122442405-122443068)
	37-622, gnl\|loxAfr1\|scaffold_98177 (4336-4747)
	37-622, gnl\|panTro1\|chr2 (124156875-124157280)
	37-622, gnl\|rheMac2\|chr2 (41245663-41246062)
	37-622, gnl\|rn3\|chr11 (65398575-65398838)