Non-Coding RNA Search

recc2806c_p12.y1

Sequence:


               
               CCTCGTGCCGTTTTGAAGGCATTTGATTCACCAGAACCATGTCCACTTGCTATCTTGGTT
TCTCTGCTTCTCACTTTGTTCATCGTGGCAAAGTCGTAGGCTTCAGAGACTCCAGGCCAG
TGGAACACTGAAAATACAACTGAAACACACAAAACTATACTCAATATTTGCATACAAATT
TGAGGTGCTTCTGAAAGGAAATGATCATTCCATGTCATGTTTTTAACAGACCACCTGTGG
CTATGTTGGTCACAGTCTCATCCTGTTGCTTCAGGAAACAGCATCCTCCTCGGGGTATGT
TGAGTACATGTGGGTGGGGAAATCTTATCAGTATATGAAAACTTTGTTTATCTAAGGTGC
AAAGACCCACCATGGGTCTCTCTCCTACCAAATAATTTACTTGGTTTTGTCCTGTCACAC
TCTATTTTAGAAACATTCTTCTCTTGGCCTTTACATTTTTTAGTTTCTTACAGAATATTT
AGGACTAGCATGCAATAATAGATCATTTTCTTGCTGCCAATGCCTTGAACAACCAAAAAT
AATAATAATAATAATAATAATAATACTGGCAATAGTGAAAAGAAACCCATTCTTTTTAAA
AATTTATCTCAATTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCGTGCCGTTTTGAAGGCATTTGATTCACCAGAACCATGTCCACTTGCTATCTTGGTT
TCTCTGCTTCTCACTTTGTTCATCGTGGCAAAGTCGTAGGCTTCAGAGACTCCAGGCCAG
TGGAACACTGAAAATACAACTGAAACACACAAAACTATACTCAATATTTGCATACAAATT
TGAGGTGCTTCTGAAAGGAAATGATCATTCCATGTCATGTTTTTAACAGACCACCTGTGG
CTATGTTGGTCACAGTCTCATCCTGTTGCTTCAGGAAACAGCATCCTCCTCGGGGTATGT
TGAGTACATGTGGGTGGGGAAATCTTATCAGTATATGAAAACTTTGTTTATCTAAGGTGC
AAAGACCCACCATGGGTCTCTCTCCTACCAAATAATTTACTTGGTTTTGTCCTGTCACAC
TCTATTTTAGAAACATTCTTCTCTTGGCCTTTACATTTTTTAGTTTCTTACAGAATATTT
AGGACTAGCATGCAATAATAGATCATTTTCTTGCTGCCAATGCCTTGAACAACCAAAAAT
AATAATAATAATAATAATAATAATACTGGCAATAGTGAAAAGAAACCCATTCTTTTTAAA
AATTTATCTCAATTTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               352-466, - strand, RNAz p=0.714025

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               352-466, - strand, RNAz p=0.714025

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               198-566, gnl|bosTau2|chrX (10053642-10054008)
               

               
               198-566, gnl|Hg17|chr12 (23572347-23572011)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               198-566, gnl|bosTau2|chrX (10053642-10054008)
               

               
               198-566, gnl|Hg17|chr12 (23572347-23572011)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	198-566, gnl\|bosTau2\|chrX (10053642-10054008)
	198-566, gnl\|Hg17\|chr12 (23572347-23572011)