Non-Coding RNA Search

recc2807c_e19.y1

Sequence:


               
               TATGTGAAAAAGAGAAGGAGATGAAGAGAGGGAGAAAATTGTTAGCTACAGGATATGTCT
TTATGAATCCTTAGTGATATGCATGGATAGATGATAGATAGATAGGTAATGATGAGATGG
GGGAGAAAGCTAGCAACATAATATGATTGACAGTATCTTAAGTGTATAGCACTTTACAGT
TTAGAATGCAGTTAGATCTAGGTAGACAAAAGTATATCCCTGACCCCAGGTCCTTCATTC
TTTCCTGAGCATGCTTTCTGATAGAGCATGAGCAGCAGGAATCTGTGAGGAGACAGTGGC
CACTGGGCAGGGGATTCCTTTTCTAGGTTTAAGTCAGAAGGGCCACAGCATCTCCACAGG
CTCAGTTCAAAGCCCTGGGGCCACATGTTTGGGAGGGAGGTGGAAGGAGGTCGTGAGGAT
GGGGCTGGGTTAGAATTGTCCAGACAAAATGGAGCTGGAGAGGCTCAGGTCAAGGGCCCT
GCCTCCCCTGCACGTCTAGGCTTTTCCCTTTCAGCTCTCTCCCTGTGCATCCTGGAGCTT
TGGCAGTTGAAGAGGGGAATCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGTGAAAAAGAGAAGGAGATGAAGAGAGGGAGAAAATTGTTAGCTACAGGATATGTCT
TTATGAATCCTTAGTGATATGCATGGATAGATGATAGATAGATAGGTAATGATGAGATGG
GGGAGAAAGCTAGCAACATAATATGATTGACAGTATCTTAAGTGTATAGCACTTTACAGT
TTAGAATGCAGTTAGATCTAGGTAGACAAAAGTATATCCCTGACCCCAGGTCCTTCATTC
TTTCCTGAGCATGCTTTCTGATAGAGCATGAGCAGCAGGAATCTGTGAGGAGACAGTGGC
CACTGGGCAGGGGATTCCTTTTCTAGGTTTAAGTCAGAAGGGCCACAGCATCTCCACAGG
CTCAGTTCAAAGCCCTGGGGCCACATGTTTGGGAGGGAGGTGGAAGGAGGTCGTGAGGAT
GGGGCTGGGTTAGAATTGTCCAGACAAAATGGAGCTGGAGAGGCTCAGGTCAAGGGCCCT
GCCTCCCCTGCACGTCTAGGCTTTTCCCTTTCAGCTCTCTCCCTGTGCATCCTGGAGCTT
TGGCAGTTGAAGAGGGGAATCTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               269-453, - strand, RNAz p=0.766367

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               269-453, - strand, RNAz p=0.766367

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-554, gnl|bosTau2|chr3 (10754592-10754041)
               

               
               1-554, gnl|echTel1|scaffold_299422 (5235-5660)
               

               
               1-554, gnl|hg17|chr1 (153209758-153210233)
               

               
               1-554, gnl|Hg17|chr1 (153210396-153209820)
               

               
               1-554, gnl|loxAfr1|scaffold_8532 (6246-5780)
               

               
               1-554, gnl|mm7|chr3 (88323418-88323053)
               

               
               1-554, gnl|Mm7|chr3 (88322779-88323348)
               

               
               1-554, gnl|monDom2|scaffold_59 (1069675-1069225)
               

               
               1-554, gnl|oryCun1|scaffold_185037 (11380-11826)
               

               
               1-554, gnl|panTro1|chr1 (135171667-135172142)
               

               
               1-554, gnl|rheMac2|chr1 (135031313-135031788)
               

               
               1-554, gnl|rn3|chr2 (180237223-180236873)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-554, gnl|bosTau2|chr3 (10754592-10754041)
               

               
               1-554, gnl|echTel1|scaffold_299422 (5235-5660)
               

               
               1-554, gnl|hg17|chr1 (153209758-153210233)
               

               
               1-554, gnl|Hg17|chr1 (153210396-153209820)
               

               
               1-554, gnl|loxAfr1|scaffold_8532 (6246-5780)
               

               
               1-554, gnl|mm7|chr3 (88323418-88323053)
               

               
               1-554, gnl|Mm7|chr3 (88322779-88323348)
               

               
               1-554, gnl|monDom2|scaffold_59 (1069675-1069225)
               

               
               1-554, gnl|oryCun1|scaffold_185037 (11380-11826)
               

               
               1-554, gnl|panTro1|chr1 (135171667-135172142)
               

               
               1-554, gnl|rheMac2|chr1 (135031313-135031788)
               

               
               1-554, gnl|rn3|chr2 (180237223-180236873)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-554, gnl\|bosTau2\|chr3 (10754592-10754041)
	1-554, gnl\|echTel1\|scaffold_299422 (5235-5660)
	1-554, gnl\|hg17\|chr1 (153209758-153210233)
	1-554, gnl\|Hg17\|chr1 (153210396-153209820)
	1-554, gnl\|loxAfr1\|scaffold_8532 (6246-5780)
	1-554, gnl\|mm7\|chr3 (88323418-88323053)
	1-554, gnl\|Mm7\|chr3 (88322779-88323348)
	1-554, gnl\|monDom2\|scaffold_59 (1069675-1069225)
	1-554, gnl\|oryCun1\|scaffold_185037 (11380-11826)
	1-554, gnl\|panTro1\|chr1 (135171667-135172142)
	1-554, gnl\|rheMac2\|chr1 (135031313-135031788)
	1-554, gnl\|rn3\|chr2 (180237223-180236873)