Non-Coding RNA Search

recc2807c_k19.y1

Sequence:


               
               TCATGCACTACCAGTAGGTTACTGTTATTTTTAAAAAGTCGTTACTTTTAAACCCTAAAA
TATGTCCCCAGTTCTACACTGTCATCCTACTTCCCTGAATGTTGCTTAGAAGTGGACGAA
GGCTCCGTCAGTGGTCGTCGTGCTGTCCCTATTGACACTGCAGCATTCAGTTTCAGTACC
TTAGACAGCTACCTGGCTGCTTCCTGGTAGGCGGGCACAGCCCCTTCCCTCCCCTCCTCT
GCAGTCAGACGGTTTAAAGACGCCCTGGACCACATCCCTTCCTTCTCTATTGCCACCAAA
GTAAACATGGGAGCAGGATCTTTGATACCACTAAGAAAGGAACCTTACAGGGAGAGCAAT
ATTAACTGTCCGCCTCTGGTAGTAGAATATAGACGAGTTCTCTTCATCCTGAAAGCTTGT
GCCAGGCTGCATGAATAGAAATTAACACTAGACTCTTGTCAGACAAGTAATATATAGATT
TTTACTAAAATAGACTGAAGCTTATTAAAAACATACTCAGTGCAATGGTATATAAATATA
TACAGATAGAGAAAAAAAAATAACTGTGATCTTTTTTTCTTACACCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATGCACTACCAGTAGGTTACTGTTATTTTTAAAAAGTCGTTACTTTTAAACCCTAAAA
TATGTCCCCAGTTCTACACTGTCATCCTACTTCCCTGAATGTTGCTTAGAAGTGGACGAA
GGCTCCGTCAGTGGTCGTCGTGCTGTCCCTATTGACACTGCAGCATTCAGTTTCAGTACC
TTAGACAGCTACCTGGCTGCTTCCTGGTAGGCGGGCACAGCCCCTTCCCTCCCCTCCTCT
GCAGTCAGACGGTTTAAAGACGCCCTGGACCACATCCCTTCCTTCTCTATTGCCACCAAA
GTAAACATGGGAGCAGGATCTTTGATACCACTAAGAAAGGAACCTTACAGGGAGAGCAAT
ATTAACTGTCCGCCTCTGGTAGTAGAATATAGACGAGTTCTCTTCATCCTGAAAGCTTGT
GCCAGGCTGCATGAATAGAAATTAACACTAGACTCTTGTCAGACAAGTAATATATAGATT
TTTACTAAAATAGACTGAAGCTTATTAAAAACATACTCAGTGCAATGGTATATAAATATA
TACAGATAGAGAAAAAAAAATAACTGTGATCTTTTTTTCTTACACCG

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               4-586, gnl|bosTau2|chr3 (8778032-8777443)
               

               
               4-586, gnl|canFam2|chr7 (45677404-45676807)
               

               
               4-586, gnl|dasNov1|scaffold_1593 (101188-100569)
               

               
               4-586, gnl|hg17|chr1 (151488391-151488981)
               

               
               4-586, gnl|Hg17|chr1 (151489116-151488590)
               

               
               4-586, gnl|loxAfr1|scaffold_34112 (10157-9533)
               

               
               4-586, gnl|mm7|chr3 (89798634-89798067)
               

               
               4-586, gnl|Mm7|chr3 (89797914-89798452)
               

               
               4-586, gnl|monDom2|scaffold_59 (3364802-3364178)
               

               
               4-586, gnl|oryCun1|scaffold_86928 (3211-3804)
               

               
               4-586, gnl|panTro1|chr1 (133471524-133472113)
               

               
               4-586, gnl|rn3|chr2 (181815187-181814623)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-586, gnl|bosTau2|chr3 (8778032-8777443)
               

               
               4-586, gnl|canFam2|chr7 (45677404-45676807)
               

               
               4-586, gnl|dasNov1|scaffold_1593 (101188-100569)
               

               
               4-586, gnl|hg17|chr1 (151488391-151488981)
               

               
               4-586, gnl|Hg17|chr1 (151489116-151488590)
               

               
               4-586, gnl|loxAfr1|scaffold_34112 (10157-9533)
               

               
               4-586, gnl|mm7|chr3 (89798634-89798067)
               

               
               4-586, gnl|Mm7|chr3 (89797914-89798452)
               

               
               4-586, gnl|monDom2|scaffold_59 (3364802-3364178)
               

               
               4-586, gnl|oryCun1|scaffold_86928 (3211-3804)
               

               
               4-586, gnl|panTro1|chr1 (133471524-133472113)
               

               
               4-586, gnl|rn3|chr2 (181815187-181814623)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	4-586, gnl\|bosTau2\|chr3 (8778032-8777443)
	4-586, gnl\|canFam2\|chr7 (45677404-45676807)
	4-586, gnl\|dasNov1\|scaffold_1593 (101188-100569)
	4-586, gnl\|hg17\|chr1 (151488391-151488981)
	4-586, gnl\|Hg17\|chr1 (151489116-151488590)
	4-586, gnl\|loxAfr1\|scaffold_34112 (10157-9533)
	4-586, gnl\|mm7\|chr3 (89798634-89798067)
	4-586, gnl\|Mm7\|chr3 (89797914-89798452)
	4-586, gnl\|monDom2\|scaffold_59 (3364802-3364178)
	4-586, gnl\|oryCun1\|scaffold_86928 (3211-3804)
	4-586, gnl\|panTro1\|chr1 (133471524-133472113)
	4-586, gnl\|rn3\|chr2 (181815187-181814623)