recc2811c_o14.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCATCTCTGATGATGTGGCTGGAGCCACCTTTATGGCTGCTGGGGGCTCAGCCCCAGAA CTTTTCACGTCTCTCATAGGGGTATTTATTGCTCATAGCAATGTCGGCATTGGTACTATC GTGGGCTCAGCGGTGTTCAATATCCTCTTTGTCATTGGCATGTGTGCTCTGTTTTCCAGA GAAATCTTAAACCTGACGTGGTGGCCACTCTTTCGGGATGTGTCCTTCTACATCATTGAC TTGATCATGCTGATCATATTTTTCCTGGATAATTTTATCATGTGGTGGGAAAGCTTGCTT CTCTTAACAGCTTACTTTGGCTATGTGGTTTTCATGAAATTCAACGTCCAAGTAGAAAGA TGGGTGAAGCAAATGATAAATCGCAACAAAGTCGTCAAGGTGACAGCACCAGAGGCCCAA GCAAAGGCTAAGCCACGACTCCAGCGAGGTGGGAGTTCTGCCTCCCTCCACAACAGTCTC ATGAGGAACAGCATCTTCCAGCTCATGATACACACCCTTGACCCACTTGCTGAAGGTAAA CACCGGGCTTTAGTTTGGCAGCGTGTTTGAGGGGGGAAAGGATGCGAAAAGACTTCTCTT CATAAAACATGTTTACGCTTCTGTCACAAACCTGCTGATGTCTGCATGTGTAGCCTCTGC CAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCATCTCTGATGATGTGGCTGGAGCCACCTTTATGGCTGCTGGGGGCTCAGCCCCAGAA CTTTTCACGTCTCTCATAGGGGTATTTATTGCTCATAGCAATGTCGGCATTGGTACTATC GTGGGCTCAGCGGTGTTCAATATCCTCTTTGTCATTGGCATGTGTGCTCTGTTTTCCAGA GAAATCTTAAACCTGACGTGGTGGCCACTCTTTCGGGATGTGTCCTTCTACATCATTGAC TTGATCATGCTGATCATATTTTTCCTGGATAATTTTATCATGTGGTGGGAAAGCTTGCTT CTCTTAACAGCTTACTTTGGCTATGTGGTTTTCATGAAATTCAACGTCCAAGTAGAAAGA TGGGTGAAGCAAATGATAAATCGCAACAAAGTCGTCAAGGTGACAGCACCAGAGGCCCAA GCAAAGGCTAAGCCACGACTCCAGCGAGGTGGGAGTTCTGCCTCCCTCCACAACAGTCTC ATGAGGAACAGCATCTTCCAGCTCATGATACACACCCTTGACCCACTTGCTGAAGGTAAA CACCGGGCTTTAGTTTGGCAGCGTGTTTGAGGGGGGAAAGGATGCGAAAAGACTTCTCTT CATAAAACATGTTTACGCTTCTGTCACAAACCTGCTGATGTCTGCATGTGTAGCCTCTGC CAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 4-122, + strand, RNAz p=0.776745 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 4-122, + strand, RNAz p=0.776745 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-427, gnl|bosTau2|chr8 (7696937-7697363) | |
| 1-427, gnl|Hg17|chr9 (19776360-19775934) | |
| 1-427, gnl|Mm7|chr4 (86631034-86630608) | |
| 4-424, gnl|bosTau2|chr10 (9122154-9122575) | |
| 4-424, gnl|canFam2|chr30 (32963766-32964358) | |
| 4-424, gnl|danRer3|chr18 (23064445-23065042) | |
| 4-424, gnl|dasNov1|scaffold_195814 (793-1383) | |
| 4-424, gnl|echTel1|scaffold_323314 (9622-9029) | |
| 4-424, gnl|fr1|chrUn (68006671-68006074) | |
| 4-424, gnl|galGal2|chr10 (18753204-18753817) | |
| 4-424, gnl|hg17|chr15 (63704776-63705368) | |
| 4-424, gnl|Hg17|chr15 (63704940-63705361) | |
| 4-424, gnl|loxAfr1|scaffold_21969 (7625-7038) | |
| 4-424, gnl|mm7|chr9 (64978062-64977470) | |
| 4-424, gnl|Mm7|chr9 (64977896-64977475) | |
| 4-424, gnl|monDom2|scaffold_12 (47505208-47504616) | |
| 4-424, gnl|oryCun1|scaffold_210864 (235415-234828) | |
| 4-424, gnl|panTro1|chr16 (64191381-64191973) | |
| 4-424, gnl|rheMac2|chr7 (44119790-44120382) | |
| 4-424, gnl|rn3|chr8 (69226280-69225688) | |
| 4-424, gnl|tetNig1|chr13 (7531526-7532123) | |
| 4-424, gnl|xenTro1|scaffold_208 (122424-121830) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-427, gnl|bosTau2|chr8 (7696937-7697363) | |
| 1-427, gnl|Hg17|chr9 (19776360-19775934) | |
| 1-427, gnl|Mm7|chr4 (86631034-86630608) | |
| 4-424, gnl|bosTau2|chr10 (9122154-9122575) | |
| 4-424, gnl|canFam2|chr30 (32963766-32964358) | |
| 4-424, gnl|danRer3|chr18 (23064445-23065042) | |
| 4-424, gnl|dasNov1|scaffold_195814 (793-1383) | |
| 4-424, gnl|echTel1|scaffold_323314 (9622-9029) | |
| 4-424, gnl|fr1|chrUn (68006671-68006074) | |
| 4-424, gnl|galGal2|chr10 (18753204-18753817) | |
| 4-424, gnl|hg17|chr15 (63704776-63705368) | |
| 4-424, gnl|Hg17|chr15 (63704940-63705361) | |
| 4-424, gnl|loxAfr1|scaffold_21969 (7625-7038) | |
| 4-424, gnl|mm7|chr9 (64978062-64977470) | |
| 4-424, gnl|Mm7|chr9 (64977896-64977475) | |
| 4-424, gnl|monDom2|scaffold_12 (47505208-47504616) | |
| 4-424, gnl|oryCun1|scaffold_210864 (235415-234828) | |
| 4-424, gnl|panTro1|chr16 (64191381-64191973) | |
| 4-424, gnl|rheMac2|chr7 (44119790-44120382) | |
| 4-424, gnl|rn3|chr8 (69226280-69225688) | |
| 4-424, gnl|tetNig1|chr13 (7531526-7532123) | |
| 4-424, gnl|xenTro1|scaffold_208 (122424-121830) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) |