recc2812c_c6.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCACCACAGAACAGCGCTTCCTCAAAGACAGTCTGTACGGTGAAGGAATCCTAATTGTG TGGGACCCGTCTATTTACCATTCAGACATCCCAAAGTGGTACAAGAATCCCGACTACCGT TTCTTCGATAACTTCAAGAGCTATCGTAAGCTGCATCCTGATCAGCCCTTTTACATCCTG AAGCCCCAGATGCCTTGGGAGCTGTGGGACATCATTCAAGAAATCTCCCCAGAGGCCATC CAGCCCAACCCCCCATCCTCTGGGATGCTTGGCATCATCATCATGATGACGCTGTGTGAC CAGGTGGATGTTTATGAGTTCCTCCCATCCAAGCGCAAGACTGACGTGTGCTACTACTAC CAGAAGTTCTTTGACAGCGCCTGCACCATGGGTGCCTACCACCCGCTACTCTTTGAGAAG AACATGGTGAAGCACCTCAACAGGGGCCCAGACGAGGACATCTACCTGCTTGGGAAAGCC ACGCTGCCAGGCTTCCGGAGCATTCACTGTGGAGCATGAGCCTCCTGTTAGCCCCCTCGC CCTTCTCCACTGGGTATTTTACAGCTGAGTGGTCCCAGTAATCAGAGCCTGCCTTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCACCACAGAACAGCGCTTCCTCAAAGACAGTCTGTACGGTGAAGGAATCCTAATTGTG TGGGACCCGTCTATTTACCATTCAGACATCCCAAAGTGGTACAAGAATCCCGACTACCGT TTCTTCGATAACTTCAAGAGCTATCGTAAGCTGCATCCTGATCAGCCCTTTTACATCCTG AAGCCCCAGATGCCTTGGGAGCTGTGGGACATCATTCAAGAAATCTCCCCAGAGGCCATC CAGCCCAACCCCCCATCCTCTGGGATGCTTGGCATCATCATCATGATGACGCTGTGTGAC CAGGTGGATGTTTATGAGTTCCTCCCATCCAAGCGCAAGACTGACGTGTGCTACTACTAC CAGAAGTTCTTTGACAGCGCCTGCACCATGGGTGCCTACCACCCGCTACTCTTTGAGAAG AACATGGTGAAGCACCTCAACAGGGGCCCAGACGAGGACATCTACCTGCTTGGGAAAGCC ACGCTGCCAGGCTTCCGGAGCATTCACTGTGGAGCATGAGCCTCCTGTTAGCCCCCTCGC CCTTCTCCACTGGGTATTTTACAGCTGAGTGGTCCCAGTAATCAGAGCCTGCCTTCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 310-429, - strand, RNAz p=0.564782 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 310-429, - strand, RNAz p=0.564782 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 271-567, gnl|bosTau2|chr26 (27673444-27673147) | |
| 271-567, gnl|canFam2|chr34 (22594372-22594650) | |
| 271-567, gnl|danRer3|chr21 (24061492-24061738) | |
| 271-567, gnl|dasNov1|scaffold_72608 (4876-4599) | |
| 271-567, gnl|echTel1|scaffold_283964 (112405-112681) | |
| 271-567, gnl|fr1|chrUn (146932723-146932984) | |
| 271-567, gnl|galGal2|chr9 (8352422-8352160) | |
| 271-567, gnl|hg17|chr3 (188276031-188276295) | |
| 271-567, gnl|Hg17|chr3 (188276051-188276335) | |
| 271-567, gnl|mm7|chr16 (23016230-23016494) | |
| 271-567, gnl|Mm7|chr16 (23016250-23016534) | |
| 271-567, gnl|monDom2|scaffold_77 (1044644-1044376) | |
| 271-567, gnl|oryCun1|scaffold_174150 (47020-47342) | |
| 271-567, gnl|panTro1|chr2 (192359884-192360148) | |
| 271-567, gnl|rheMac2|chr2 (179412273-179412537) | |
| 271-567, gnl|rn3|chr11 (79783608-79783337) | |
| 271-567, gnl|tetNig1|chr7 (10079278-10079523) | |
| 271-567, gnl|xenTro1|scaffold_108 (1932269-1932019) | |
| 299-565, gnl|bosTau2|chr1 (77575434-77575701) | |
| 299-565, gnl|Hg17|chr3 (188276079-188276333) | |
| 299-565, gnl|Mm7|chr16 (23016278-23016532) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 271-567, gnl|bosTau2|chr26 (27673444-27673147) | |
| 271-567, gnl|canFam2|chr34 (22594372-22594650) | |
| 271-567, gnl|danRer3|chr21 (24061492-24061738) | |
| 271-567, gnl|dasNov1|scaffold_72608 (4876-4599) | |
| 271-567, gnl|echTel1|scaffold_283964 (112405-112681) | |
| 271-567, gnl|fr1|chrUn (146932723-146932984) | |
| 271-567, gnl|galGal2|chr9 (8352422-8352160) | |
| 271-567, gnl|hg17|chr3 (188276031-188276295) | |
| 271-567, gnl|Hg17|chr3 (188276051-188276335) | |
| 271-567, gnl|mm7|chr16 (23016230-23016494) | |
| 271-567, gnl|Mm7|chr16 (23016250-23016534) | |
| 271-567, gnl|monDom2|scaffold_77 (1044644-1044376) | |
| 271-567, gnl|oryCun1|scaffold_174150 (47020-47342) | |
| 271-567, gnl|panTro1|chr2 (192359884-192360148) | |
| 271-567, gnl|rheMac2|chr2 (179412273-179412537) | |
| 271-567, gnl|rn3|chr11 (79783608-79783337) | |
| 271-567, gnl|tetNig1|chr7 (10079278-10079523) | |
| 271-567, gnl|xenTro1|scaffold_108 (1932269-1932019) | |
| 299-565, gnl|bosTau2|chr1 (77575434-77575701) | |
| 299-565, gnl|Hg17|chr3 (188276079-188276333) | |
| 299-565, gnl|Mm7|chr16 (23016278-23016532) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) |