Non-Coding RNA Search

recc2812c_i15.y1

Sequence:


               
               CTCAACTCTTTACTGACAACTTCGACTACCAAACCCGAGATGACTTTGTGCGAGGCCTGT
TAGTAAATGAGGAGATCTTAGGCAACCAGATCCACATGCATGTGACTACTAAGGAATATG
GTGCCCGGGTCTCCAACCTACACATGTATGCTGCTGTCTGTGCTGATGTCATCCGCCGAT
GGGTCTACCCTCTCACCCCAGAGGCGAACTTCACTGATAGCACAACTCAGAGCTGCACTC
ACTCCCGGCACAACATCTACCGAGGGCCTGAGGTCAGCCTGGGCCATGGCAGCGTCCTGG
AGGAAAATGTGCTCCTGGGCTCTGGCACTGTCATTGGCAGCAATTGCTCCATCACCAACA
GTGTCATTGGCCCCGGCTGTCACATTGGTGATGATGTGGTGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAACTCTTTACTGACAACTTCGACTACCAAACCCGAGATGACTTTGTGCGAGGCCTGT
TAGTAAATGAGGAGATCTTAGGCAACCAGATCCACATGCATGTGACTACTAAGGAATATG
GTGCCCGGGTCTCCAACCTACACATGTATGCTGCTGTCTGTGCTGATGTCATCCGCCGAT
GGGTCTACCCTCTCACCCCAGAGGCGAACTTCACTGATAGCACAACTCAGAGCTGCACTC
ACTCCCGGCACAACATCTACCGAGGGCCTGAGGTCAGCCTGGGCCATGGCAGCGTCCTGG
AGGAAAATGTGCTCCTGGGCTCTGGCACTGTCATTGGCAGCAATTGCTCCATCACCAACA
GTGTCATTGGCCCCGGCTGTCACATTGGTGATGATGTGGTGCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               272-391, + strand, RNAz p=0.988964

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               272-391, + strand, RNAz p=0.988964

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               306-386, + strand, RNAmicro p=0.999505
               

               
               199-348, - strand, RNAmicro p=0.997393

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               306-386, + strand, RNAmicro p=0.999505
               

               
               199-348, - strand, RNAmicro p=0.997393

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               73-391, gnl|bosTau2|chr1 (51301075-51300757)
               

               
               73-391, gnl|canFam2|chr34 (20049415-20049765)
               

               
               73-391, gnl|danRer3|chrNA (178338677-178338346)
               

               
               73-391, gnl|dasNov1|scaffold_38166 (6536-6883)
               

               
               73-391, gnl|echTel1|scaffold_313231 (2985-3335)
               

               
               73-391, gnl|fr1|chrUn (68304391-68304044)
               

               
               73-391, gnl|galGal2|chr9 (15127903-15128254)
               

               
               73-391, gnl|hg17|chr3 (185340886-185341233)
               

               
               73-391, gnl|Hg17|chr3 (185340906-185341224)
               

               
               73-391, gnl|loxAfr1|scaffold_6504 (13734-14080)
               

               
               73-391, gnl|mm7|chr16 (20052533-20052876)
               

               
               73-391, gnl|Mm7|chr16 (20052549-20052867)
               

               
               73-391, gnl|monDom2|scaffold_167 (1435547-1435890)
               

               
               73-391, gnl|oryCun1|scaffold_174838 (43004-43352)
               

               
               73-391, gnl|panTro1|chr2 (189291578-189291925)
               

               
               73-391, gnl|rheMac2|chr2 (102530019-102529672)
               

               
               73-391, gnl|rn3|chr11 (82698217-82697874)
               

               
               73-391, gnl|tetNig1|chr15 (2221821-2222162)
               

               
               73-391, gnl|xenTro1|scaffold_1143 (42490-42158)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-391, gnl|bosTau2|chr1 (51301075-51300757)
               

               
               73-391, gnl|canFam2|chr34 (20049415-20049765)
               

               
               73-391, gnl|danRer3|chrNA (178338677-178338346)
               

               
               73-391, gnl|dasNov1|scaffold_38166 (6536-6883)
               

               
               73-391, gnl|echTel1|scaffold_313231 (2985-3335)
               

               
               73-391, gnl|fr1|chrUn (68304391-68304044)
               

               
               73-391, gnl|galGal2|chr9 (15127903-15128254)
               

               
               73-391, gnl|hg17|chr3 (185340886-185341233)
               

               
               73-391, gnl|Hg17|chr3 (185340906-185341224)
               

               
               73-391, gnl|loxAfr1|scaffold_6504 (13734-14080)
               

               
               73-391, gnl|mm7|chr16 (20052533-20052876)
               

               
               73-391, gnl|Mm7|chr16 (20052549-20052867)
               

               
               73-391, gnl|monDom2|scaffold_167 (1435547-1435890)
               

               
               73-391, gnl|oryCun1|scaffold_174838 (43004-43352)
               

               
               73-391, gnl|panTro1|chr2 (189291578-189291925)
               

               
               73-391, gnl|rheMac2|chr2 (102530019-102529672)
               

               
               73-391, gnl|rn3|chr11 (82698217-82697874)
               

               
               73-391, gnl|tetNig1|chr15 (2221821-2222162)
               

               
               73-391, gnl|xenTro1|scaffold_1143 (42490-42158)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	306-386, + strand, RNAmicro p=0.999505
	199-348, - strand, RNAmicro p=0.997393

	73-391, gnl\|bosTau2\|chr1 (51301075-51300757)
	73-391, gnl\|canFam2\|chr34 (20049415-20049765)
	73-391, gnl\|danRer3\|chrNA (178338677-178338346)
	73-391, gnl\|dasNov1\|scaffold_38166 (6536-6883)
	73-391, gnl\|echTel1\|scaffold_313231 (2985-3335)
	73-391, gnl\|fr1\|chrUn (68304391-68304044)
	73-391, gnl\|galGal2\|chr9 (15127903-15128254)
	73-391, gnl\|hg17\|chr3 (185340886-185341233)
	73-391, gnl\|Hg17\|chr3 (185340906-185341224)
	73-391, gnl\|loxAfr1\|scaffold_6504 (13734-14080)
	73-391, gnl\|mm7\|chr16 (20052533-20052876)
	73-391, gnl\|Mm7\|chr16 (20052549-20052867)
	73-391, gnl\|monDom2\|scaffold_167 (1435547-1435890)
	73-391, gnl\|oryCun1\|scaffold_174838 (43004-43352)
	73-391, gnl\|panTro1\|chr2 (189291578-189291925)
	73-391, gnl\|rheMac2\|chr2 (102530019-102529672)
	73-391, gnl\|rn3\|chr11 (82698217-82697874)
	73-391, gnl\|tetNig1\|chr15 (2221821-2222162)
	73-391, gnl\|xenTro1\|scaffold_1143 (42490-42158)