Non-Coding RNA Search

recc2815c_k23.y1

Sequence:


               
               CCTGTTTCCTCAGCTCGTGCAACCTGCCCTCTCAGCACATCCTCTTTCCCTCTTAGTCTC
GTCCCCTTCGCGCCCCGTATTCCGCCCCCAGACTGCAGTGGACACCCAGTCCAGGGAGCG
GGTTCCTTCATCACAGTTCCTTTTCCGCTCAGGGCCCTGTGGAGTTAGGAAAGATCATCT
AAAGCACCATTCTTTCCTCCCTCCTTCCCCGAGGAAGCCAAACGGTCCCTGGCAAGAGAA
GACCACAACTCGGTTCAGATGTGAGCGGGGCTGGCACACCCAGGGGGTGCTGGCATCGCT
GCAGACCAGAGGTCCAGGTGGGGGACTTCTGCATTTTGCAAGGAGCTACCCCTCCACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGTTTCCTCAGCTCGTGCAACCTGCCCTCTCAGCACATCCTCTTTCCCTCTTAGTCTC
GTCCCCTTCGCGCCCCGTATTCCGCCCCCAGACTGCAGTGGACACCCAGTCCAGGGAGCG
GGTTCCTTCATCACAGTTCCTTTTCCGCTCAGGGCCCTGTGGAGTTAGGAAAGATCATCT
AAAGCACCATTCTTTCCTCCCTCCTTCCCCGAGGAAGCCAAACGGTCCCTGGCAAGAGAA
GACCACAACTCGGTTCAGATGTGAGCGGGGCTGGCACACCCAGGGGGTGCTGGCATCGCT
GCAGACCAGAGGTCCAGGTGGGGGACTTCTGCATTTTGCAAGGAGCTACCCCTCCACCT

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-234, gnl|bosTau2|chr4 (57740030-57740268)
               

               
               1-234, gnl|canFam2|chr16 (9322516-9321802)
               

               
               1-234, gnl|dasNov1|scaffold_200647 (4716-3962)
               

               
               1-234, gnl|hg17|chr7 (142567988-142568710)
               

               
               1-234, gnl|Hg17|chr7 (142568429-142568199)
               

               
               1-234, gnl|mm7|chr6 (42258937-42259650)
               

               
               1-234, gnl|Mm7|chr6 (42259367-42259157)
               

               
               1-234, gnl|monDom2|scaffold_7 (1945777-1946453)
               

               
               1-234, gnl|oryCun1|scaffold_197916 (10301-11004)
               

               
               1-234, gnl|panTro1|chr6 (145365281-145366003)
               

               
               1-234, gnl|rheMac2|chr3 (180901558-180902269)
               

               
               1-234, gnl|rn3|chr4 (70359273-70359972)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-234, gnl|bosTau2|chr4 (57740030-57740268)
               

               
               1-234, gnl|canFam2|chr16 (9322516-9321802)
               

               
               1-234, gnl|dasNov1|scaffold_200647 (4716-3962)
               

               
               1-234, gnl|hg17|chr7 (142567988-142568710)
               

               
               1-234, gnl|Hg17|chr7 (142568429-142568199)
               

               
               1-234, gnl|mm7|chr6 (42258937-42259650)
               

               
               1-234, gnl|Mm7|chr6 (42259367-42259157)
               

               
               1-234, gnl|monDom2|scaffold_7 (1945777-1946453)
               

               
               1-234, gnl|oryCun1|scaffold_197916 (10301-11004)
               

               
               1-234, gnl|panTro1|chr6 (145365281-145366003)
               

               
               1-234, gnl|rheMac2|chr3 (180901558-180902269)
               

               
               1-234, gnl|rn3|chr4 (70359273-70359972)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-234, gnl\|bosTau2\|chr4 (57740030-57740268)
	1-234, gnl\|canFam2\|chr16 (9322516-9321802)
	1-234, gnl\|dasNov1\|scaffold_200647 (4716-3962)
	1-234, gnl\|hg17\|chr7 (142567988-142568710)
	1-234, gnl\|Hg17\|chr7 (142568429-142568199)
	1-234, gnl\|mm7\|chr6 (42258937-42259650)
	1-234, gnl\|Mm7\|chr6 (42259367-42259157)
	1-234, gnl\|monDom2\|scaffold_7 (1945777-1946453)
	1-234, gnl\|oryCun1\|scaffold_197916 (10301-11004)
	1-234, gnl\|panTro1\|chr6 (145365281-145366003)
	1-234, gnl\|rheMac2\|chr3 (180901558-180902269)
	1-234, gnl\|rn3\|chr4 (70359273-70359972)