Non-Coding RNA Search

recc2817c_c14.y1

Sequence:


               
               GCGCCGCCCACGCAGGAGAAGACGCCCACCAGGTCCGAGGGCTAGCGAGAAGCCGCGCAG
GGTCACCTAGGCGCGAGCCGTTGCGGGCCAGGTGCGGGGGCTGCCAGGGCCGGGGCGTGC
GCACGATGCGGTCGTCCTTCTCCAGCAGCAGCGGGGGCTCCCAGGCGTCCGAGCCCCGGC
TCGCCCCGGCCTCCCCGGACACGCAGGTCAGGAAGAAGCGCTGGGGCTCGGTCAGGCGCA
GGTCGGCCAGCAGCGTCAGGTCCACCGCGGCGCCTGGGCCGGGACACCGGGCTCTGATCT
GGCAGGGTCCCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCGCCCACGCAGGAGAAGACGCCCACCAGGTCCGAGGGCTAGCGAGAAGCCGCGCAG
GGTCACCTAGGCGCGAGCCGTTGCGGGCCAGGTGCGGGGGCTGCCAGGGCCGGGGCGTGC
GCACGATGCGGTCGTCCTTCTCCAGCAGCAGCGGGGGCTCCCAGGCGTCCGAGCCCCGGC
TCGCCCCGGCCTCCCCGGACACGCAGGTCAGGAAGAAGCGCTGGGGCTCGGTCAGGCGCA
GGTCGGCCAGCAGCGTCAGGTCCACCGCGGCGCCTGGGCCGGGACACCGGGCTCTGATCT
GGCAGGGTCCCCG

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-311, gnl|bosTau2|chr3 (67648716-67649024)
               

               
               1-311, gnl|canFam2|chr15 (19866649-19866287)
               

               
               1-311, gnl|galGal2|chr8 (19958062-19958466)
               

               
               1-311, gnl|hg17|chr1 (43439533-43439927)
               

               
               1-311, gnl|Hg17|chr1 (43439882-43439579)
               

               
               1-311, gnl|loxAfr1|scaffold_43276 (13456-13858)
               

               
               1-311, gnl|mm7|chr4 (117863210-117862820)
               

               
               1-311, gnl|Mm7|chr4 (117862863-117863160)
               

               
               1-311, gnl|monDom2|scaffold_87 (214633-214235)
               

               
               1-311, gnl|panTro1|chr1 (44418150-44418544)
               

               
               1-311, gnl|rheMac2|chr1 (46218011-46218405)
               

               
               1-311, gnl|rn3|chr5 (138967155-138966755)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-311, gnl|bosTau2|chr3 (67648716-67649024)
               

               
               1-311, gnl|canFam2|chr15 (19866649-19866287)
               

               
               1-311, gnl|galGal2|chr8 (19958062-19958466)
               

               
               1-311, gnl|hg17|chr1 (43439533-43439927)
               

               
               1-311, gnl|Hg17|chr1 (43439882-43439579)
               

               
               1-311, gnl|loxAfr1|scaffold_43276 (13456-13858)
               

               
               1-311, gnl|mm7|chr4 (117863210-117862820)
               

               
               1-311, gnl|Mm7|chr4 (117862863-117863160)
               

               
               1-311, gnl|monDom2|scaffold_87 (214633-214235)
               

               
               1-311, gnl|panTro1|chr1 (44418150-44418544)
               

               
               1-311, gnl|rheMac2|chr1 (46218011-46218405)
               

               
               1-311, gnl|rn3|chr5 (138967155-138966755)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-311, gnl\|bosTau2\|chr3 (67648716-67649024)
	1-311, gnl\|canFam2\|chr15 (19866649-19866287)
	1-311, gnl\|galGal2\|chr8 (19958062-19958466)
	1-311, gnl\|hg17\|chr1 (43439533-43439927)
	1-311, gnl\|Hg17\|chr1 (43439882-43439579)
	1-311, gnl\|loxAfr1\|scaffold_43276 (13456-13858)
	1-311, gnl\|mm7\|chr4 (117863210-117862820)
	1-311, gnl\|Mm7\|chr4 (117862863-117863160)
	1-311, gnl\|monDom2\|scaffold_87 (214633-214235)
	1-311, gnl\|panTro1\|chr1 (44418150-44418544)
	1-311, gnl\|rheMac2\|chr1 (46218011-46218405)
	1-311, gnl\|rn3\|chr5 (138967155-138966755)