Non-Coding RNA Search

recc2817c_f18.y1

Sequence:


               
               GCGGCAACTCGGCTCCAGCACGGCCAGCGCCAGCGCCGCCGTCGGTGCACCCTCGGAGCC
GTGCATCCTGCCCACTGGAGTTGGTTGTGTATCAAGGATCCCCTATATGCACACACACAC
CTCCACCTCCACCAATGCACTCTTCTTCCTCCTCCTCCTCCAGACCTCTGCTGGGAAAAA
AATAAAACACCAACCCCAACCTTCAGCAGCAAGGTAACAGAGAAACTCGACCTCGTTTTT
CTCCTGTTCAATTTTTTCCTTGTTATATTTGTTTCCTCATTTCTGCCCAAAGGGAAAGAT
GTCGCATCAGACTGTGACTGTTGCGAGGAGAATGAAAAAGGACTCTTGTTTCAGAGGCAA
CCAAGAGCTCGGGCAATAGCAACTTCAGAGAAATGCACCATCGCAAGAAGTTTTCCTAGG
ACAGAACAAAACTTGAAACGCGAGGACCAGAGGGGGAGAGCAGGAGCCAGCCTCTCCTCT
CGGCACGCGTGCAGCCAGCATCACCACGCCTTCAAGGACGAAAAAAGTTTTACTACTCTA
AGGGGAGACGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCAACTCGGCTCCAGCACGGCCAGCGCCAGCGCCGCCGTCGGTGCACCCTCGGAGCC
GTGCATCCTGCCCACTGGAGTTGGTTGTGTATCAAGGATCCCCTATATGCACACACACAC
CTCCACCTCCACCAATGCACTCTTCTTCCTCCTCCTCCTCCAGACCTCTGCTGGGAAAAA
AATAAAACACCAACCCCAACCTTCAGCAGCAAGGTAACAGAGAAACTCGACCTCGTTTTT
CTCCTGTTCAATTTTTTCCTTGTTATATTTGTTTCCTCATTTCTGCCCAAAGGGAAAGAT
GTCGCATCAGACTGTGACTGTTGCGAGGAGAATGAAAAAGGACTCTTGTTTCAGAGGCAA
CCAAGAGCTCGGGCAATAGCAACTTCAGAGAAATGCACCATCGCAAGAAGTTTTCCTAGG
ACAGAACAAAACTTGAAACGCGAGGACCAGAGGGGGAGAGCAGGAGCCAGCCTCTCCTCT
CGGCACGCGTGCAGCCAGCATCACCACGCCTTCAAGGACGAAAAAAGTTTTACTACTCTA
AGGGGAGACGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-186, - strand, RNAz p=0.926098

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-186, - strand, RNAz p=0.926098

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               57-150, + strand, RNAmicro p=0.975841
               

               
               47-189, - strand, RNAmicro p=0.959661

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               57-150, + strand, RNAmicro p=0.975841
               

               
               47-189, - strand, RNAmicro p=0.959661

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-552, gnl|bosTau2|chr11 (6549182-6549738)
               

               
               2-552, gnl|Hg17|chr2 (104929246-104929802)
               

               
               2-552, gnl|Mm7|chr1 (42936316-42936865)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-552, gnl|bosTau2|chr11 (6549182-6549738)
               

               
               2-552, gnl|Hg17|chr2 (104929246-104929802)
               

               
               2-552, gnl|Mm7|chr1 (42936316-42936865)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	57-150, + strand, RNAmicro p=0.975841
	47-189, - strand, RNAmicro p=0.959661

	2-552, gnl\|bosTau2\|chr11 (6549182-6549738)
	2-552, gnl\|Hg17\|chr2 (104929246-104929802)
	2-552, gnl\|Mm7\|chr1 (42936316-42936865)