Non-Coding RNA Search

recc2817c_p12.y1

Sequence:


               
               CGCTGGTCGCAGGTTCCGCCAGCCGCTGAGGACCCGCGGGTTTCCGCCCCAGCGTAGGTT
TCTGGAGCAGAGGTGTCAGAGGTGGCAGAACTTGAACTGAGCCTCGAAGGGGAAGACTTT
GGCAAAGTGGTAACTGATACAGATTGTACATGGGATAGGATTTAGTCTCCCCTTAACGTC
TGAATCAATGAAGCGAAAATGGGAAGCAAAATTGAAGCAAATTGAAGAACGAGCATCCTT
GTATGAGAGGAAACCATTGTCCTCGGTGTACAGACCAAGACTGTCCAAGCCAGAAGAACC
ACCCTCCATTTGGAAACTATTTCATCGGCAATCTCAAGCTTTTAATTTTGTTAAAAGCTG
TAAAGAGGATGTTCATGTATTTGCTTTGGAGTGCAAAGTGGGTGATGGACAACGTATTTA
CCTTGTAACAACCTATACTGAACTTGGGTATTACTATAAATCCCGAAGAAACCTCTTACA
CTGCTATGAAGTCATTCCTGAAAATGCTGTGTGCAAGCTTTATTTGGATTGGGAATTTAA
CAAACTTGCCAATCCAGAAGCTGATGGAAAAAAGATGGTTGCATTACTCATTGAGCATGT
TTGTAAAGCACTTCAAGAGTTTTATGGGGTCAATTGTTCAGCTGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTGGTCGCAGGTTCCGCCAGCCGCTGAGGACCCGCGGGTTTCCGCCCCAGCGTAGGTT
TCTGGAGCAGAGGTGTCAGAGGTGGCAGAACTTGAACTGAGCCTCGAAGGGGAAGACTTT
GGCAAAGTGGTAACTGATACAGATTGTACATGGGATAGGATTTAGTCTCCCCTTAACGTC
TGAATCAATGAAGCGAAAATGGGAAGCAAAATTGAAGCAAATTGAAGAACGAGCATCCTT
GTATGAGAGGAAACCATTGTCCTCGGTGTACAGACCAAGACTGTCCAAGCCAGAAGAACC
ACCCTCCATTTGGAAACTATTTCATCGGCAATCTCAAGCTTTTAATTTTGTTAAAAGCTG
TAAAGAGGATGTTCATGTATTTGCTTTGGAGTGCAAAGTGGGTGATGGACAACGTATTTA
CCTTGTAACAACCTATACTGAACTTGGGTATTACTATAAATCCCGAAGAAACCTCTTACA
CTGCTATGAAGTCATTCCTGAAAATGCTGTGTGCAAGCTTTATTTGGATTGGGAATTTAA
CAAACTTGCCAATCCAGAAGCTGATGGAAAAAAGATGGTTGCATTACTCATTGAGCATGT
TTGTAAAGCACTTCAAGAGTTTTATGGGGTCAATTGTTCAGCTGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55623742|ref|XP_526797.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55623742|ref|XP_526797.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               245-368, - strand, RNAz p=0.784942

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               245-368, - strand, RNAz p=0.784942

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               126-368, gnl|bosTau2|chr27 (9981930-9982170)
               

               
               126-368, gnl|canFam2|chr16 (48874304-48874056)
               

               
               126-368, gnl|danRer3|chr1 (18935730-18935996)
               

               
               126-368, gnl|dasNov1|scaffold_47128 (7846-7591)
               

               
               126-368, gnl|echTel1|scaffold_191766 (511-764)
               

               
               126-368, gnl|galGal2|chr4 (40104347-40104099)
               

               
               126-368, gnl|hg17|chr4 (185953372-185953630)
               

               
               126-368, gnl|Hg17|chr4 (185953383-185953624)
               

               
               126-368, gnl|loxAfr1|scaffold_34772 (18568-18307)
               

               
               126-368, gnl|mm7|chr8 (45388553-45388304)
               

               
               126-368, gnl|Mm7|chr8 (45388548-45388308)
               

               
               126-368, gnl|monDom2|scaffold_9 (66774094-66774394)
               

               
               126-368, gnl|oryCun1|scaffold_175652 (4040-4286)
               

               
               126-368, gnl|panTro1|chr3_random (30380159-30380417)
               

               
               126-368, gnl|rheMac2|chr5 (176756394-176756652)
               

               
               126-368, gnl|rn3|chr16 (48968610-48968859)
               

               
               126-368, gnl|xenTro1|scaffold_99 (1826349-1826618)
               


               
               459-595, gnl|bosTau2|chr27 (9984681-9984817)
               

               
               459-595, gnl|Hg17|chr4 (185958070-185958206)
               

               
               459-595, gnl|Mm7|chr8 (45383089-45382954)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-368, gnl|bosTau2|chr27 (9981930-9982170)
               

               
               126-368, gnl|canFam2|chr16 (48874304-48874056)
               

               
               126-368, gnl|danRer3|chr1 (18935730-18935996)
               

               
               126-368, gnl|dasNov1|scaffold_47128 (7846-7591)
               

               
               126-368, gnl|echTel1|scaffold_191766 (511-764)
               

               
               126-368, gnl|galGal2|chr4 (40104347-40104099)
               

               
               126-368, gnl|hg17|chr4 (185953372-185953630)
               

               
               126-368, gnl|Hg17|chr4 (185953383-185953624)
               

               
               126-368, gnl|loxAfr1|scaffold_34772 (18568-18307)
               

               
               126-368, gnl|mm7|chr8 (45388553-45388304)
               

               
               126-368, gnl|Mm7|chr8 (45388548-45388308)
               

               
               126-368, gnl|monDom2|scaffold_9 (66774094-66774394)
               

               
               126-368, gnl|oryCun1|scaffold_175652 (4040-4286)
               

               
               126-368, gnl|panTro1|chr3_random (30380159-30380417)
               

               
               126-368, gnl|rheMac2|chr5 (176756394-176756652)
               

               
               126-368, gnl|rn3|chr16 (48968610-48968859)
               

               
               126-368, gnl|xenTro1|scaffold_99 (1826349-1826618)
               


               
               459-595, gnl|bosTau2|chr27 (9984681-9984817)
               

               
               459-595, gnl|Hg17|chr4 (185958070-185958206)
               

               
               459-595, gnl|Mm7|chr8 (45383089-45382954)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	126-368, gnl\|bosTau2\|chr27 (9981930-9982170)
	126-368, gnl\|canFam2\|chr16 (48874304-48874056)
	126-368, gnl\|danRer3\|chr1 (18935730-18935996)
	126-368, gnl\|dasNov1\|scaffold_47128 (7846-7591)
	126-368, gnl\|echTel1\|scaffold_191766 (511-764)
	126-368, gnl\|galGal2\|chr4 (40104347-40104099)
	126-368, gnl\|hg17\|chr4 (185953372-185953630)
	126-368, gnl\|Hg17\|chr4 (185953383-185953624)
	126-368, gnl\|loxAfr1\|scaffold_34772 (18568-18307)
	126-368, gnl\|mm7\|chr8 (45388553-45388304)
	126-368, gnl\|Mm7\|chr8 (45388548-45388308)
	126-368, gnl\|monDom2\|scaffold_9 (66774094-66774394)
	126-368, gnl\|oryCun1\|scaffold_175652 (4040-4286)
	126-368, gnl\|panTro1\|chr3_random (30380159-30380417)
	126-368, gnl\|rheMac2\|chr5 (176756394-176756652)
	126-368, gnl\|rn3\|chr16 (48968610-48968859)
	126-368, gnl\|xenTro1\|scaffold_99 (1826349-1826618)

	459-595, gnl\|bosTau2\|chr27 (9984681-9984817)
	459-595, gnl\|Hg17\|chr4 (185958070-185958206)
	459-595, gnl\|Mm7\|chr8 (45383089-45382954)