Non-Coding RNA Search

recc2818c_c24.y1

Sequence:


               
               AAAGAATTCTAAATAGATGAAAACAAACAATTTGATTTCAACCAAATTGTTGTTTTTTTG
TTTTTATCCTGATTTTCACCCGAATTGTCAGTCTCAAAAATAAACACTGATACATTCCCA
GAAAATATTTTTCAAATAAAAACTGACTCTGTTaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAATTCTAAATAGATGAAAACAAACAATTTGATTTCAACCAAATTGTTGTTTTTTTG
TTTTTATCCTGATTTTCACCCGAATTGTCAGTCTCAAAAATAAACACTGATACATTCCCA
GAAAATATTTTTCAAATAAAAACTGACTCTGTTaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaa

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-156, + strand, RNAz p=0.999935

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-156, + strand, RNAz p=0.999935

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               66-52, nz42b05.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone IMAGE (gb|AA769587.1|), 
blast E-value=2e-19, identity=100%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               66-52, nz42b05.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone IMAGE (gb|AA769587.1|), 
blast E-value=2e-19, identity=100%

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-156, gnl|bosTau2|chr16 (18791746-18791591)
               

               
               1-156, gnl|canFam2|chr7 (37596746-37598262)
               

               
               1-156, gnl|dasNov1|scaffold_44401 (914-2344)
               

               
               1-156, gnl|echTel1|scaffold_325382 (51337-49817)
               

               
               1-156, gnl|hg17|chr1 (239982881-239984422)
               

               
               1-156, gnl|Hg17|chr1 (239983512-239983667)
               

               
               1-156, gnl|loxAfr1|scaffold_4145 (64309-62784)
               

               
               1-156, gnl|mm7|chr1 (176981483-176982968)
               

               
               1-156, gnl|Mm7|chr1 (176982085-176982240)
               

               
               1-156, gnl|monDom2|scaffold_13 (40354869-40353307)
               

               
               1-156, gnl|oryCun1|scaffold_205583 (45802-47339)
               

               
               1-156, gnl|panTro1|chr1 (223976870-223978411)
               

               
               1-156, gnl|rheMac2|chr1 (213610034-213608498)
               

               
               1-156, gnl|rn3|chr13 (92986399-92987905)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-156, gnl|bosTau2|chr16 (18791746-18791591)
               

               
               1-156, gnl|canFam2|chr7 (37596746-37598262)
               

               
               1-156, gnl|dasNov1|scaffold_44401 (914-2344)
               

               
               1-156, gnl|echTel1|scaffold_325382 (51337-49817)
               

               
               1-156, gnl|hg17|chr1 (239982881-239984422)
               

               
               1-156, gnl|Hg17|chr1 (239983512-239983667)
               

               
               1-156, gnl|loxAfr1|scaffold_4145 (64309-62784)
               

               
               1-156, gnl|mm7|chr1 (176981483-176982968)
               

               
               1-156, gnl|Mm7|chr1 (176982085-176982240)
               

               
               1-156, gnl|monDom2|scaffold_13 (40354869-40353307)
               

               
               1-156, gnl|oryCun1|scaffold_205583 (45802-47339)
               

               
               1-156, gnl|panTro1|chr1 (223976870-223978411)
               

               
               1-156, gnl|rheMac2|chr1 (213610034-213608498)
               

               
               1-156, gnl|rn3|chr13 (92986399-92987905)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-156, gnl\|bosTau2\|chr16 (18791746-18791591)
	1-156, gnl\|canFam2\|chr7 (37596746-37598262)
	1-156, gnl\|dasNov1\|scaffold_44401 (914-2344)
	1-156, gnl\|echTel1\|scaffold_325382 (51337-49817)
	1-156, gnl\|hg17\|chr1 (239982881-239984422)
	1-156, gnl\|Hg17\|chr1 (239983512-239983667)
	1-156, gnl\|loxAfr1\|scaffold_4145 (64309-62784)
	1-156, gnl\|mm7\|chr1 (176981483-176982968)
	1-156, gnl\|Mm7\|chr1 (176982085-176982240)
	1-156, gnl\|monDom2\|scaffold_13 (40354869-40353307)
	1-156, gnl\|oryCun1\|scaffold_205583 (45802-47339)
	1-156, gnl\|panTro1\|chr1 (223976870-223978411)
	1-156, gnl\|rheMac2\|chr1 (213610034-213608498)
	1-156, gnl\|rn3\|chr13 (92986399-92987905)