Non-Coding RNA Search

recc2818c_l5.y1

Sequence:


               
               GGGATTTATAATGAAGAGTATTAAAAGGGAACAGTGATAATTTCAACCATATTCCAGATT
TCTTGGTGACATTACTCTAGAGGTCTAAAGTGTATACTTCAATATGATAGTCTCTGGCCA
CATGTGTCTCTTTAAAGTTAAATAAAATTTAAAATTCAGTCACATTAGCCACAGTTCCAG
CACTCAGTAACTGTACAGTACAGCTATAGAACATTTTTATCATTGTAAAAAAGATCTATT
GGACGGTATTGGTCTGGTGACTTTTAGTAGTTCATTTATTAAAATGCATGAAATTTAATT
TTTAAAAATTCACTGTTTAATTAAAGGCAATAACTTGGTTTTAGACCCCTGGAAAGTGAT
GCAATAATATTTTAGAATGAATTATGTTGAATTTTGCTACAGTAGTCGTTTGGTGTTTGT
ACCTGGTCCAGAGGATCCTGGATTTGGTTCCATCTTACCAAGGTAAGTTTTATTCAGATA
TTTGCAACAGGAAAGAAAACTTTGTAAACTCTAAAAATATATACTGTATCACAAAAATTG
TTTTTATAGGCCCCCATTTGCTGAAAGCATCACTAATGAATTCAGACAAAGAGTACCATA
TTCAGTTTTTACTACTAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGATTTATAATGAAGAGTATTAAAAGGGAACAGTGATAATTTCAACCATATTCCAGATT
TCTTGGTGACATTACTCTAGAGGTCTAAAGTGTATACTTCAATATGATAGTCTCTGGCCA
CATGTGTCTCTTTAAAGTTAAATAAAATTTAAAATTCAGTCACATTAGCCACAGTTCCAG
CACTCAGTAACTGTACAGTACAGCTATAGAACATTTTTATCATTGTAAAAAAGATCTATT
GGACGGTATTGGTCTGGTGACTTTTAGTAGTTCATTTATTAAAATGCATGAAATTTAATT
TTTAAAAATTCACTGTTTAATTAAAGGCAATAACTTGGTTTTAGACCCCTGGAAAGTGAT
GCAATAATATTTTAGAATGAATTATGTTGAATTTTGCTACAGTAGTCGTTTGGTGTTTGT
ACCTGGTCCAGAGGATCCTGGATTTGGTTCCATCTTACCAAGGTAAGTTTTATTCAGATA
TTTGCAACAGGAAAGAAAACTTTGTAAACTCTAAAAATATATACTGTATCACAAAAATTG
TTTTTATAGGCCCCCATTTGCTGAAAGCATCACTAATGAATTCAGACAAAGAGTACCATA
TTCAGTTTTTACTACTAATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               371-489, - strand, RNAz p=0.862011

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               371-489, - strand, RNAz p=0.862011

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               134-620, gnl|bosTau2|chr10 (29999946-29999471)
               

               
               134-620, gnl|Hg17|chr14 (49190937-49190465)
               

               
               134-620, gnl|Mm7|chr12 (67149801-67149363)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               134-620, gnl|bosTau2|chr10 (29999946-29999471)
               

               
               134-620, gnl|Hg17|chr14 (49190937-49190465)
               

               
               134-620, gnl|Mm7|chr12 (67149801-67149363)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	134-620, gnl\|bosTau2\|chr10 (29999946-29999471)
	134-620, gnl\|Hg17\|chr14 (49190937-49190465)
	134-620, gnl\|Mm7\|chr12 (67149801-67149363)