Non-Coding RNA Search

recc2820c_c20.y1

Sequence:


               
               GCCACTCGGCTCCTGGCGGCAGCCGCTGCAGGATAAAACAGAGTGGGAGGGGAGACATGA
GCTGGCCAGAGGCCCGGTCTGCCCGGGGGCCGCCACCCGCGGCTCTGGCTCACACTCACC
CCCTTCAAGAGCGTCCTCCTTCAAGAGCCTCAGCCACCCTGTTAGGGGAGAGGAGCGGAG
GCAGCTGGTGAGCCCAGCTGCCGCCTTCTCCTGGCCAGCTCCCAGGCCCACTTGAGGAGT
CCAGCCCCTGGGGAATCGCTCACCTTTCACGTGGTCCTTTTTGACAAGGAGGAGAAGGAA
AAGCACAGCGGCAAAAAGTAAGCAGGCCAGCCACACCAGGGCCCAGCGCTGGTGGGTGTC
TAGGAGACCCAGGGGAGAAGACAGGCTTGTTAGAGGCCCCCCACTTCATGATGGAGAAAA
ACTGAGGCTCAGAGAATGTGATTTACCCCAACTCCACAGCTCATAGGGTCAGAGCCAGTG
TATGAACAAAGATCATACATAGATGTTGTGTGTGACTTTGACTAAATGACTTCACTTTCT
GTCTCATTTCACCTCTGTAAAACTGAAATAACAATTGTATCTACTTCCTAAGATTATTGT
GAGAACTACATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACTCGGCTCCTGGCGGCAGCCGCTGCAGGATAAAACAGAGTGGGAGGGGAGACATGA
GCTGGCCAGAGGCCCGGTCTGCCCGGGGGCCGCCACCCGCGGCTCTGGCTCACACTCACC
CCCTTCAAGAGCGTCCTCCTTCAAGAGCCTCAGCCACCCTGTTAGGGGAGAGGAGCGGAG
GCAGCTGGTGAGCCCAGCTGCCGCCTTCTCCTGGCCAGCTCCCAGGCCCACTTGAGGAGT
CCAGCCCCTGGGGAATCGCTCACCTTTCACGTGGTCCTTTTTGACAAGGAGGAGAAGGAA
AAGCACAGCGGCAAAAAGTAAGCAGGCCAGCCACACCAGGGCCCAGCGCTGGTGGGTGTC
TAGGAGACCCAGGGGAGAAGACAGGCTTGTTAGAGGCCCCCCACTTCATGATGGAGAAAA
ACTGAGGCTCAGAGAATGTGATTTACCCCAACTCCACAGCTCATAGGGTCAGAGCCAGTG
TATGAACAAAGATCATACATAGATGTTGTGTGTGACTTTGACTAAATGACTTCACTTTCT
GTCTCATTTCACCTCTGTAAAACTGAAATAACAATTGTATCTACTTCCTAAGATTATTGT
GAGAACTACATGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               159-267, - strand, RNAz p=0.615218

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-267, - strand, RNAz p=0.615218

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               188-276, + strand, RNAmicro p=0.905013

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               188-276, + strand, RNAmicro p=0.905013

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-613, gnl|bosTau2|chr22 (12032928-12032324)
               

               
               1-613, gnl|Hg17|chr3 (9949658-9948739)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-613, gnl|bosTau2|chr22 (12032928-12032324)
               

               
               1-613, gnl|Hg17|chr3 (9949658-9948739)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-613, gnl\|bosTau2\|chr22 (12032928-12032324)
	1-613, gnl\|Hg17\|chr3 (9949658-9948739)