Non-Coding RNA Search

recc2820c_m5.y1

Sequence:


               
               AGAGATAATGGAATATTTCAAATTTCATACTCCTACAGCTATTTTTAAAATCTACTCAAT
AGAAAGACTTGGGATTTAATGCTTTAAGTTCTTAGCAGTTAATTTATTTGGTGCTTTTAC
CAGAACATTATATAACTTTGATTTTTTTTTCGTTTTTTAAGAAAATATGGggagttcctg
tggtggctcagtggtgatgaacctgactagtatccatgaggacgcgggttcaatccctgg
ccttgttcagtgggttaaggatccggcattgccatgagctgtggtgtaggtcacagacat
ggcttgggtcctgcattgctgtggctgtggtgtaggccagcagctgcagtccaattcgac
ccctggcctgggaacttccatatg

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGATAATGGAATATTTCAAATTTCATACTCCTACAGCTATTTTTAAAATCTACTCAAT
AGAAAGACTTGGGATTTAATGCTTTAAGTTCTTAGCAGTTAATTTATTTGGTGCTTTTAC
CAGAACATTATATAACTTTGATTTTTTTTTCGTTTTTTAAGAAAATATGGggagttcctg
tggtggctcagtggtgatgaacctgactagtatccatgaggacgcgggttcaatccctgg
ccttgttcagtgggttaaggatccggcattgccatgagctgtggtgtaggtcacagacat
ggcttgggtcctgcattgctgtggctgtggtgtaggccagcagctgcagtccaattcgac
ccctggcctgggaacttccatatg

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               11-169, gnl|bosTau2|chr7 (13578208-13578049)
               

               
               11-169, gnl|dasNov1|scaffold_266 (165355-165238)
               

               
               11-169, gnl|echTel1|scaffold_248662 (2864-2995)
               

               
               11-169, gnl|hg17|chr4 (26353656-26353793)
               

               
               11-169, gnl|Hg17|chr4 (26353666-26353816)
               

               
               11-169, gnl|loxAfr1|scaffold_11676 (43903-44040)
               

               
               11-169, gnl|panTro1|chr3 (26936351-26936488)
               

               
               11-169, gnl|rheMac2|chr5 (21448156-21448286)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-169, gnl|bosTau2|chr7 (13578208-13578049)
               

               
               11-169, gnl|dasNov1|scaffold_266 (165355-165238)
               

               
               11-169, gnl|echTel1|scaffold_248662 (2864-2995)
               

               
               11-169, gnl|hg17|chr4 (26353656-26353793)
               

               
               11-169, gnl|Hg17|chr4 (26353666-26353816)
               

               
               11-169, gnl|loxAfr1|scaffold_11676 (43903-44040)
               

               
               11-169, gnl|panTro1|chr3 (26936351-26936488)
               

               
               11-169, gnl|rheMac2|chr5 (21448156-21448286)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	11-169, gnl\|bosTau2\|chr7 (13578208-13578049)
	11-169, gnl\|dasNov1\|scaffold_266 (165355-165238)
	11-169, gnl\|echTel1\|scaffold_248662 (2864-2995)
	11-169, gnl\|hg17\|chr4 (26353656-26353793)
	11-169, gnl\|Hg17\|chr4 (26353666-26353816)
	11-169, gnl\|loxAfr1\|scaffold_11676 (43903-44040)
	11-169, gnl\|panTro1\|chr3 (26936351-26936488)
	11-169, gnl\|rheMac2\|chr5 (21448156-21448286)