recc2821c_m23.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAACATTTGAAATCCAAGGGGCTTCTAGAAAAAGCCGTGCTGCTTTTGGATTTCCCCCC CGGCGCATCCAGACGAAGAACTGCTGAGGTCAGATGACGGCAGAATAATTGTGAAATATT TACCACCAAATGTCACCAGTCTCATGCAGCCTATGAGCCAAGGCGTTCTAGCCACAGTGA AAAGATACTACCGAGCAGGACTTCTCCAGAAATACATGGATGAAGGAATTGACCCCAGAA TGTTCTGGAAGAACTTGACCGTGTTAGACGCAATTTATGAAGTGTCGAGGGCGTGGAACA TGGTAAAGTCAAGTACCATAACCAAAGCCTGGAAAAAACTCTTCCCTGGCAGTGAAGAGA GCTCAGGCATGAACATTGACGAAGGAGCCATTTTAGCGGCTAACTTAGCCACCGTTTGGC AAAACACAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAACATTTGAAATCCAAGGGGCTTCTAGAAAAAGCCGTGCTGCTTTTGGATTTCCCCCC CGGCGCATCCAGACGAAGAACTGCTGAGGTCAGATGACGGCAGAATAATTGTGAAATATT TACCACCAAATGTCACCAGTCTCATGCAGCCTATGAGCCAAGGCGTTCTAGCCACAGTGA AAAGATACTACCGAGCAGGACTTCTCCAGAAATACATGGATGAAGGAATTGACCCCAGAA TGTTCTGGAAGAACTTGACCGTGTTAGACGCAATTTATGAAGTGTCGAGGGCGTGGAACA TGGTAAAGTCAAGTACCATAACCAAAGCCTGGAAAAAACTCTTCCCTGGCAGTGAAGAGA GCTCAGGCATGAACATTGACGAAGGAGCCATTTTAGCGGCTAACTTAGCCACCGTTTGGC AAAACACAGAA |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 80-359, - strand, RNAz p=0.732436 | |
| 200-319, + strand, RNAz p=0.701999 | |
| 241-358, - strand, RNAz p=0.545637 | |
| 244-363, - strand, RNAz p=0.758442 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-359, - strand, RNAz p=0.732436 | |
| 200-319, + strand, RNAz p=0.701999 | |
| 241-358, - strand, RNAz p=0.545637 | |
| 244-363, - strand, RNAz p=0.758442 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-431, gnl|bosTau2|chr6 (15733041-15732612) | |
| 1-431, gnl|canFam2|chr32 (15301713-15302119) | |
| 1-431, gnl|dasNov1|scaffold_90389 (4232-4647) | |
| 1-431, gnl|echTel1|scaffold_311873 (8190-7784) | |
| 1-431, gnl|hg17|chr4 (90392037-90392443) | |
| 1-431, gnl|Hg17|chr4 (90392128-90392557) | |
| 1-431, gnl|mm7|chr6 (59179406-59179812) | |
| 1-431, gnl|Mm7|chr6 (59179497-59179926) | |
| 1-431, gnl|monDom2|scaffold_32 (20946579-20946173) | |
| 1-431, gnl|oryCun1|scaffold_189978 (9163-8756) | |
| 1-431, gnl|panTro1|chr3 (106386632-106387038) | |
| 1-431, gnl|rheMac2|chr5 (82060369-82060775) | |
| 1-431, gnl|rn3|chr4 (88459187-88459593) | |
| 1-431, gnl|xenTro1|scaffold_450 (907466-907050) | |
| 5-427, gnl|bosTau2|chr11 (28034535-28034956) | |
| 5-427, gnl|canFam2|chr21 (7783387-7782516) | |
| 5-427, gnl|dasNov1|scaffold_90389 (4132-5009) | |
| 5-427, gnl|echTel1|scaffold_311873 (8291-7420) | |
| 5-427, gnl|hg17|chr11 (95764094-95764965) | |
| 5-427, gnl|Hg17|chr11 (95764290-95764711) | |
| 5-427, gnl|mm7|chrUn_random (11374195-11373327) | |
| 5-427, gnl|Mm7|chrUn_random (11373997-11373579) | |
| 5-427, gnl|monDom2|scaffold_15 (671608-670737) | |
| 5-427, gnl|oryCun1|scaffold_150505 (8953-8082) | |
| 5-427, gnl|panTro1|chr9 (97695514-97696385) | |
| 5-427, gnl|rheMac2|chr14 (94938979-94939850) | |
| 5-427, gnl|rn3|chr8 (10117024-10116153) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-431, gnl|bosTau2|chr6 (15733041-15732612) | |
| 1-431, gnl|canFam2|chr32 (15301713-15302119) | |
| 1-431, gnl|dasNov1|scaffold_90389 (4232-4647) | |
| 1-431, gnl|echTel1|scaffold_311873 (8190-7784) | |
| 1-431, gnl|hg17|chr4 (90392037-90392443) | |
| 1-431, gnl|Hg17|chr4 (90392128-90392557) | |
| 1-431, gnl|mm7|chr6 (59179406-59179812) | |
| 1-431, gnl|Mm7|chr6 (59179497-59179926) | |
| 1-431, gnl|monDom2|scaffold_32 (20946579-20946173) | |
| 1-431, gnl|oryCun1|scaffold_189978 (9163-8756) | |
| 1-431, gnl|panTro1|chr3 (106386632-106387038) | |
| 1-431, gnl|rheMac2|chr5 (82060369-82060775) | |
| 1-431, gnl|rn3|chr4 (88459187-88459593) | |
| 1-431, gnl|xenTro1|scaffold_450 (907466-907050) | |
| 5-427, gnl|bosTau2|chr11 (28034535-28034956) | |
| 5-427, gnl|canFam2|chr21 (7783387-7782516) | |
| 5-427, gnl|dasNov1|scaffold_90389 (4132-5009) | |
| 5-427, gnl|echTel1|scaffold_311873 (8291-7420) | |
| 5-427, gnl|hg17|chr11 (95764094-95764965) | |
| 5-427, gnl|Hg17|chr11 (95764290-95764711) | |
| 5-427, gnl|mm7|chrUn_random (11374195-11373327) | |
| 5-427, gnl|Mm7|chrUn_random (11373997-11373579) | |
| 5-427, gnl|monDom2|scaffold_15 (671608-670737) | |
| 5-427, gnl|oryCun1|scaffold_150505 (8953-8082) | |
| 5-427, gnl|panTro1|chr9 (97695514-97696385) | |
| 5-427, gnl|rheMac2|chr14 (94938979-94939850) | |
| 5-427, gnl|rn3|chr8 (10117024-10116153) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) |