Non-Coding RNA Search

recc2825c_m15.y1

Sequence:


               
               GGGGTCTGCTGTTTCAAAGAGCAGGAAAGGGCCTGAGGCAGTAGGAGAGGCCGCTGGAGG
GAGGGGCTGCTCCTCCTCCCCTTCAGTGCCCCCCCCCCGGGGGGGGCCCTCTCTGGACCT
TATTAGCAGGTTAATCACGAAGTCTCTCACTCTTTCTGAGAAGAGAGGCCAGGTCTTCAG
AGAGGGGTCCGTCCAGAGCCAAGCAGGATTGGGGGCCAGCAGGGCCTCTTCAGAGAATCA
CGTATTATTATAGGCCTTGCACCCCTTTTGCTGCTTCCCTACTGCTGACCTGGGGCAGCC
ACCAGCCTCCCACCCTCCTGGTTCCGCTGGCCGGGCCAGGAGAGGATGGGCCATGGGAGT
CCCTGGGGGTCCTAGGAGATTCTTGTATATAGTAGGGTGGGACTGTTCTAAATGATCTCT
GAGCACTTAAGCTCAGGAGTCCCATTCTTCTTGGATGGAGAGGGGGTGCAGGGATGGAGG
CATAGAGGGGATTTCCTCCTCTCCTTCCTCCTGTTGTGAATTAACTCACCTCTCCTCAGC
CTTCCCCTCCAGACCACCAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGTCTGCTGTTTCAAAGAGCAGGAAAGGGCCTGAGGCAGTAGGAGAGGCCGCTGGAGG
GAGGGGCTGCTCCTCCTCCCCTTCAGTGCCCCCCCCCCGGGGGGGGCCCTCTCTGGACCT
TATTAGCAGGTTAATCACGAAGTCTCTCACTCTTTCTGAGAAGAGAGGCCAGGTCTTCAG
AGAGGGGTCCGTCCAGAGCCAAGCAGGATTGGGGGCCAGCAGGGCCTCTTCAGAGAATCA
CGTATTATTATAGGCCTTGCACCCCTTTTGCTGCTTCCCTACTGCTGACCTGGGGCAGCC
ACCAGCCTCCCACCCTCCTGGTTCCGCTGGCCGGGCCAGGAGAGGATGGGCCATGGGAGT
CCCTGGGGGTCCTAGGAGATTCTTGTATATAGTAGGGTGGGACTGTTCTAAATGATCTCT
GAGCACTTAAGCTCAGGAGTCCCATTCTTCTTGGATGGAGAGGGGGTGCAGGGATGGAGG
CATAGAGGGGATTTCCTCCTCTCCTTCCTCCTGTTGTGAATTAACTCACCTCTCCTCAGC
CTTCCCCTCCAGACCACCAGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               186-311, + strand, RNAz p=0.998944

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               186-311, + strand, RNAz p=0.998944

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               234-355, + strand, RNAmicro p=0.997924
               

               
               236-356, - strand, RNAmicro p=0.974112

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               234-355, + strand, RNAmicro p=0.997924
               

               
               236-356, - strand, RNAmicro p=0.974112

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               35-311, gnl|bosTau2|chr3 (10544689-10544974)
               

               
               35-311, gnl|Hg17|chr1 (152858237-152857906)
               

               
               35-311, gnl|Mm7|chr3 (88652054-88652345)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-311, gnl|bosTau2|chr3 (10544689-10544974)
               

               
               35-311, gnl|Hg17|chr1 (152858237-152857906)
               

               
               35-311, gnl|Mm7|chr3 (88652054-88652345)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	234-355, + strand, RNAmicro p=0.997924
	236-356, - strand, RNAmicro p=0.974112

	35-311, gnl\|bosTau2\|chr3 (10544689-10544974)
	35-311, gnl\|Hg17\|chr1 (152858237-152857906)
	35-311, gnl\|Mm7\|chr3 (88652054-88652345)