Non-Coding RNA Search

recc2826c_o5.y1

Sequence:


               
               ATAGAACTTCCCAAGAAACTGGCAAAACGCTATCCTGCATATGAATTATATCTTTATGGA
GAAGGATCCTATGCTGAAGAACATAAAGTTCTCCCTTTAACAGGCATTCCTGTTCTCTTT
CTTCCTGGTAATGCTGGAAGTTATAAGCAAGTTCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGAACTTCCCAAGAAACTGGCAAAACGCTATCCTGCATATGAATTATATCTTTATGGA
GAAGGATCCTATGCTGAAGAACATAAAGTTCTCCCTTTAACAGGCATTCCTGTTCTCTTT
CTTCCTGGTAATGCTGGAAGTTATAAGCAAGTTCGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               33-151, - strand, RNAz p=0.948859

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               33-151, - strand, RNAz p=0.948859

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-151, gnl|bosTau2|chr2 (53707744-53707594)
               

               
               1-151, gnl|canFam2|chr37 (9492971-9493154)
               

               
               1-151, gnl|danRer3|chr7 (50747430-50747593)
               

               
               1-151, gnl|dasNov1|scaffold_218873 (832-1009)
               

               
               1-151, gnl|echTel1|scaffold_182344 (9739-9913)
               

               
               1-151, gnl|fr1|chrUn (188909445-188909579)
               

               
               1-151, gnl|galGal2|chr7 (10893708-10893884)
               

               
               1-151, gnl|hg17|chr2 (197610223-197610399)
               

               
               1-151, gnl|Hg17|chr2 (197610377-197610227)
               

               
               1-151, gnl|loxAfr1|scaffold_3103 (7992-8166)
               

               
               1-151, gnl|mm7|chr1 (54783671-54783852)
               

               
               1-151, gnl|Mm7|chr1 (54783825-54783675)
               

               
               1-151, gnl|monDom2|scaffold_2 (106586486-106586660)
               

               
               1-151, gnl|oryCun1|scaffold_148433 (8929-8753)
               

               
               1-151, gnl|panTro1|chr13 (87547284-87547460)
               

               
               1-151, gnl|rheMac2|chr12 (60536760-60536938)
               

               
               1-151, gnl|rn3|chr9 (53334010-53334191)
               

               
               1-151, gnl|tetNig1|chr2 (18497754-18497877)
               

               
               1-151, gnl|xenTro1|scaffold_282 (1417304-1417134)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-151, gnl|bosTau2|chr2 (53707744-53707594)
               

               
               1-151, gnl|canFam2|chr37 (9492971-9493154)
               

               
               1-151, gnl|danRer3|chr7 (50747430-50747593)
               

               
               1-151, gnl|dasNov1|scaffold_218873 (832-1009)
               

               
               1-151, gnl|echTel1|scaffold_182344 (9739-9913)
               

               
               1-151, gnl|fr1|chrUn (188909445-188909579)
               

               
               1-151, gnl|galGal2|chr7 (10893708-10893884)
               

               
               1-151, gnl|hg17|chr2 (197610223-197610399)
               

               
               1-151, gnl|Hg17|chr2 (197610377-197610227)
               

               
               1-151, gnl|loxAfr1|scaffold_3103 (7992-8166)
               

               
               1-151, gnl|mm7|chr1 (54783671-54783852)
               

               
               1-151, gnl|Mm7|chr1 (54783825-54783675)
               

               
               1-151, gnl|monDom2|scaffold_2 (106586486-106586660)
               

               
               1-151, gnl|oryCun1|scaffold_148433 (8929-8753)
               

               
               1-151, gnl|panTro1|chr13 (87547284-87547460)
               

               
               1-151, gnl|rheMac2|chr12 (60536760-60536938)
               

               
               1-151, gnl|rn3|chr9 (53334010-53334191)
               

               
               1-151, gnl|tetNig1|chr2 (18497754-18497877)
               

               
               1-151, gnl|xenTro1|scaffold_282 (1417304-1417134)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-151, gnl\|bosTau2\|chr2 (53707744-53707594)
	1-151, gnl\|canFam2\|chr37 (9492971-9493154)
	1-151, gnl\|danRer3\|chr7 (50747430-50747593)
	1-151, gnl\|dasNov1\|scaffold_218873 (832-1009)
	1-151, gnl\|echTel1\|scaffold_182344 (9739-9913)
	1-151, gnl\|fr1\|chrUn (188909445-188909579)
	1-151, gnl\|galGal2\|chr7 (10893708-10893884)
	1-151, gnl\|hg17\|chr2 (197610223-197610399)
	1-151, gnl\|Hg17\|chr2 (197610377-197610227)
	1-151, gnl\|loxAfr1\|scaffold_3103 (7992-8166)
	1-151, gnl\|mm7\|chr1 (54783671-54783852)
	1-151, gnl\|Mm7\|chr1 (54783825-54783675)
	1-151, gnl\|monDom2\|scaffold_2 (106586486-106586660)
	1-151, gnl\|oryCun1\|scaffold_148433 (8929-8753)
	1-151, gnl\|panTro1\|chr13 (87547284-87547460)
	1-151, gnl\|rheMac2\|chr12 (60536760-60536938)
	1-151, gnl\|rn3\|chr9 (53334010-53334191)
	1-151, gnl\|tetNig1\|chr2 (18497754-18497877)
	1-151, gnl\|xenTro1\|scaffold_282 (1417304-1417134)