recc2827c_e3.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCTTCAGACGGCCCTGACAGGTTATCAGACAAAGCAGAGAAAGCTTCTAGAACCAGTCG ATCATGGAAAAATTGAATATGAACCATTCAGAAAAAATTTTTATGTTGAAGTTCTAGAAC TGGCAAAAATGTCTCAAGAGGAGGTGAATGTATTTCGGTTGGAAATGGAGGGCATTAGTG TCAAAGGAAAAGGTTGCCCCAAACCAATTAAATCTGGGGTTCAGTGTGGGATTTCCATGA AAATCTTAAATTCTCTCAAAAAGCATGGTTATGAAAAGCCCACGCCAATCCAGACCCAGG CGATTCCTGCTATAATGTCTGGACGAGATTTGATGGGTATTGCCAAGACAGGAAGTGGAA AGACCATGGCCTTTCTGTTGCCCATGTTTAGACACATCATGGATCAGAGGTCATTAGAAG AAGGCGAGGGACCAATAGCTGTCATCATGACTCCAACTCGAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCTTCAGACGGCCCTGACAGGTTATCAGACAAAGCAGAGAAAGCTTCTAGAACCAGTCG ATCATGGAAAAATTGAATATGAACCATTCAGAAAAAATTTTTATGTTGAAGTTCTAGAAC TGGCAAAAATGTCTCAAGAGGAGGTGAATGTATTTCGGTTGGAAATGGAGGGCATTAGTG TCAAAGGAAAAGGTTGCCCCAAACCAATTAAATCTGGGGTTCAGTGTGGGATTTCCATGA AAATCTTAAATTCTCTCAAAAAGCATGGTTATGAAAAGCCCACGCCAATCCAGACCCAGG CGATTCCTGCTATAATGTCTGGACGAGATTTGATGGGTATTGCCAAGACAGGAAGTGGAA AGACCATGGCCTTTCTGTTGCCCATGTTTAGACACATCATGGATCAGAGGTCATTAGAAG AAGGCGAGGGACCAATAGCTGTCATCATGACTCCAACTCGAGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 24-141, - strand, RNAz p=0.554491 | |
| 260-378, - strand, RNAz p=0.794787 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 24-141, - strand, RNAz p=0.554491 | |
| 260-378, - strand, RNAz p=0.794787 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-141, gnl|bosTau2|chr7 (32372290-32372150) | |
| 1-141, gnl|canFam2|chr11 (25867000-25867172) | |
| 1-141, gnl|dasNov1|scaffold_9397 (56339-56167) | |
| 1-141, gnl|echTel1|scaffold_277627 (1033-1205) | |
| 1-141, gnl|fr1|chrUn (138833293-138833121) | |
| 1-141, gnl|galGal2|chr13 (14633939-14633767) | |
| 1-141, gnl|hg17|chr5 (134145509-134145681) | |
| 1-141, gnl|Hg17|chr5 (134145535-134145675) | |
| 1-141, gnl|loxAfr1|scaffold_62109 (881-1053) | |
| 1-141, gnl|mm7|chr13 (54740823-54740995) | |
| 1-141, gnl|Mm7|chr13 (54740849-54740989) | |
| 1-141, gnl|monDom2|scaffold_6 (98510728-98510900) | |
| 1-141, gnl|oryCun1|scaffold_188691 (3079-3251) | |
| 1-141, gnl|panTro1|chr4 (140503876-140504048) | |
| 1-141, gnl|rheMac2|chr6 (131214589-131214761) | |
| 1-141, gnl|rn3|chr17 (15013585-15013413) | |
| 1-141, gnl|tetNig1|chr7 (7874866-7874694) | |
| 1-141, gnl|xenTro1|scaffold_336 (426094-425922) | |
| 260-438, gnl|bosTau2|chr7 (32370772-32370594) | |
| 260-438, gnl|canFam2|chr11 (25869354-25869591) | |
| 260-438, gnl|danRer3|chr9 (896964-897155) | |
| 260-438, gnl|dasNov1|scaffold_216284 (3976-3739) | |
| 260-438, gnl|echTel1|scaffold_277627 (2743-2974) | |
| 260-438, gnl|fr1|chrUn (138832627-138832429) | |
| 260-438, gnl|galGal2|chr13 (14633090-14632837) | |
| 260-438, gnl|hg17|chr5 (134147897-134148134) | |
| 260-438, gnl|Hg17|chr5 (134147952-134148130) | |
| 260-438, gnl|loxAfr1|scaffold_62109 (2357-2593) | |
| 260-438, gnl|mm7|chr13 (54741883-54742094) | |
| 260-438, gnl|Mm7|chr13 (54741912-54742090) | |
| 260-438, gnl|monDom2|scaffold_6 (98511613-98511850) | |
| 260-438, gnl|oryCun1|scaffold_81914 (6365-6128) | |
| 260-438, gnl|panTro1|chr4_random (12943461-12943698) | |
| 260-438, gnl|rheMac2|chr6 (131218274-131218511) | |
| 260-438, gnl|rn3|chr17 (15012071-15011857) | |
| 260-438, gnl|tetNig1|chr7 (7874222-7874020) | |
| 260-438, gnl|xenTro1|scaffold_336 (423882-423665) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-141, gnl|bosTau2|chr7 (32372290-32372150) | |
| 1-141, gnl|canFam2|chr11 (25867000-25867172) | |
| 1-141, gnl|dasNov1|scaffold_9397 (56339-56167) | |
| 1-141, gnl|echTel1|scaffold_277627 (1033-1205) | |
| 1-141, gnl|fr1|chrUn (138833293-138833121) | |
| 1-141, gnl|galGal2|chr13 (14633939-14633767) | |
| 1-141, gnl|hg17|chr5 (134145509-134145681) | |
| 1-141, gnl|Hg17|chr5 (134145535-134145675) | |
| 1-141, gnl|loxAfr1|scaffold_62109 (881-1053) | |
| 1-141, gnl|mm7|chr13 (54740823-54740995) | |
| 1-141, gnl|Mm7|chr13 (54740849-54740989) | |
| 1-141, gnl|monDom2|scaffold_6 (98510728-98510900) | |
| 1-141, gnl|oryCun1|scaffold_188691 (3079-3251) | |
| 1-141, gnl|panTro1|chr4 (140503876-140504048) | |
| 1-141, gnl|rheMac2|chr6 (131214589-131214761) | |
| 1-141, gnl|rn3|chr17 (15013585-15013413) | |
| 1-141, gnl|tetNig1|chr7 (7874866-7874694) | |
| 1-141, gnl|xenTro1|scaffold_336 (426094-425922) | |
| 260-438, gnl|bosTau2|chr7 (32370772-32370594) | |
| 260-438, gnl|canFam2|chr11 (25869354-25869591) | |
| 260-438, gnl|danRer3|chr9 (896964-897155) | |
| 260-438, gnl|dasNov1|scaffold_216284 (3976-3739) | |
| 260-438, gnl|echTel1|scaffold_277627 (2743-2974) | |
| 260-438, gnl|fr1|chrUn (138832627-138832429) | |
| 260-438, gnl|galGal2|chr13 (14633090-14632837) | |
| 260-438, gnl|hg17|chr5 (134147897-134148134) | |
| 260-438, gnl|Hg17|chr5 (134147952-134148130) | |
| 260-438, gnl|loxAfr1|scaffold_62109 (2357-2593) | |
| 260-438, gnl|mm7|chr13 (54741883-54742094) | |
| 260-438, gnl|Mm7|chr13 (54741912-54742090) | |
| 260-438, gnl|monDom2|scaffold_6 (98511613-98511850) | |
| 260-438, gnl|oryCun1|scaffold_81914 (6365-6128) | |
| 260-438, gnl|panTro1|chr4_random (12943461-12943698) | |
| 260-438, gnl|rheMac2|chr6 (131218274-131218511) | |
| 260-438, gnl|rn3|chr17 (15012071-15011857) | |
| 260-438, gnl|tetNig1|chr7 (7874222-7874020) | |
| 260-438, gnl|xenTro1|scaffold_336 (423882-423665) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) |