Non-Coding RNA Search

recc2827c_n19.y1

Sequence:


               
               tctgcagtcaaatgccctacccctgagctatacccccTTGCAAGGTATAGTGTCTAACAA
ATACCCTTTCACCTGTATTGAAATGCCCACACCCACTGTGCACTGCCGTTTCTACGATTC
TCAGAAAGTTCTGGAGAGATGGGAATTTTGCCTTCCAGAAAATGAGCACCTTTGGGCCCT
CTTCTTCCACATAAATCCCGTCCCAACTTTGGCCCCTAAAAACCTTCTCGTAGTCTCGTT
TTTCCCAGTACCACTTTGAAGTTACCTGCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               tctgcagtcaaatgccctacccctgagctatacccccTTGCAAGGTATAGTGTCTAACAA
ATACCCTTTCACCTGTATTGAAATGCCCACACCCACTGTGCACTGCCGTTTCTACGATTC
TCAGAAAGTTCTGGAGAGATGGGAATTTTGCCTTCCAGAAAATGAGCACCTTTGGGCCCT
CTTCTTCCACATAAATCCCGTCCCAACTTTGGCCCCTAAAAACCTTCTCGTAGTCTCGTT
TTTCCCAGTACCACTTTGAAGTTACCTGCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               74-169, - strand, RNAz p=0.684733

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               74-169, - strand, RNAz p=0.684733

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-277, gnl|bosTau2|chr4 (65576702-65576412)
               

               
               1-277, gnl|canFam2|chr16 (17393975-17394368)
               

               
               1-277, gnl|hg17|chr7 (148680846-148681220)
               

               
               1-277, gnl|Hg17|chr7 (148681315-148681038)
               

               
               1-277, gnl|Mm7|chr6 (48329960-48330246)
               

               
               1-277, gnl|oryCun1|scaffold_81624 (5164-4779)
               

               
               1-277, gnl|panTro1|chr6 (151546067-151546441)
               

               
               1-277, gnl|rheMac2|chr3 (186860222-186860596)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-277, gnl|bosTau2|chr4 (65576702-65576412)
               

               
               1-277, gnl|canFam2|chr16 (17393975-17394368)
               

               
               1-277, gnl|hg17|chr7 (148680846-148681220)
               

               
               1-277, gnl|Hg17|chr7 (148681315-148681038)
               

               
               1-277, gnl|Mm7|chr6 (48329960-48330246)
               

               
               1-277, gnl|oryCun1|scaffold_81624 (5164-4779)
               

               
               1-277, gnl|panTro1|chr6 (151546067-151546441)
               

               
               1-277, gnl|rheMac2|chr3 (186860222-186860596)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-277, gnl\|bosTau2\|chr4 (65576702-65576412)
	1-277, gnl\|canFam2\|chr16 (17393975-17394368)
	1-277, gnl\|hg17\|chr7 (148680846-148681220)
	1-277, gnl\|Hg17\|chr7 (148681315-148681038)
	1-277, gnl\|Mm7\|chr6 (48329960-48330246)
	1-277, gnl\|oryCun1\|scaffold_81624 (5164-4779)
	1-277, gnl\|panTro1\|chr6 (151546067-151546441)
	1-277, gnl\|rheMac2\|chr3 (186860222-186860596)