recc2828c_j14.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTATCTACAACACTGTTTTGCTACTCAGAGAGCCCTGGTTTCAAAGTTCCCTGAACTC CTGTTTGAAGAAGAGACAGAGCAGTGTGCAGATTTATGCCTCCGGCTTCTCCGGCACTGT AGCAGTAGCATCAGTACAATACGGTCACATGCTAGCGCCTCCCTTTACCTACTTATGAGA CAGAACTTTGAGATTGGGAATAACTTCGCCAGGGTTAAAATGCAGGTAACCATGTCACTG TCTTCCTTGGTGGGCACGTCGCAGAATTTTAACGAGGAATTCTTAAGACGTTCTCTAAAG ACTATACTGACATATGCTGAAGAAGATCTGGAATTGAGAGAAACGACATTTCCTGATCAG GTCCAAGATTTGGTTTTCAATCTCCATATGATCCTTTCTGATACTGTTAAAATGAAGGAA CACCAGGAGGATCCTGAAATGTTGATTGACCTGATGTACAGAATTGCCAAGGGCTACCAG ACCTCTCCAGACCTGCGACTGACCTGGTTGCAGAACATGGCTGGCAAGCACTCGGAACGC AGCAATCACGCCGAAGCTGCCCAGTGCCTTGTTCACTCAGCAGCGCTTGTTGCTGAATAT CTGAGCATGCTAGAGGACCGGAAATATCTTCCTGTGGGATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTATCTACAACACTGTTTTGCTACTCAGAGAGCCCTGGTTTCAAAGTTCCCTGAACTC CTGTTTGAAGAAGAGACAGAGCAGTGTGCAGATTTATGCCTCCGGCTTCTCCGGCACTGT AGCAGTAGCATCAGTACAATACGGTCACATGCTAGCGCCTCCCTTTACCTACTTATGAGA CAGAACTTTGAGATTGGGAATAACTTCGCCAGGGTTAAAATGCAGGTAACCATGTCACTG TCTTCCTTGGTGGGCACGTCGCAGAATTTTAACGAGGAATTCTTAAGACGTTCTCTAAAG ACTATACTGACATATGCTGAAGAAGATCTGGAATTGAGAGAAACGACATTTCCTGATCAG GTCCAAGATTTGGTTTTCAATCTCCATATGATCCTTTCTGATACTGTTAAAATGAAGGAA CACCAGGAGGATCCTGAAATGTTGATTGACCTGATGTACAGAATTGCCAAGGGCTACCAG ACCTCTCCAGACCTGCGACTGACCTGGTTGCAGAACATGGCTGGCAAGCACTCGGAACGC AGCAATCACGCCGAAGCTGCCCAGTGCCTTGTTCACTCAGCAGCGCTTGTTGCTGAATAT CTGAGCATGCTAGAGGACCGGAAATATCTTCCTGTGGGATG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 240-359, + strand, RNAz p=0.682817 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 240-359, + strand, RNAz p=0.682817 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 226-319, + strand, RNAmicro p=0.997251 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 42-201, gnl|bosTau2|chr3 (56506066-56506225) | |
| 42-201, gnl|canFam2|chr5 (50616349-50616175) | |
| 42-201, gnl|danRer3|chr6 (16740674-16740499) | |
| 42-201, gnl|dasNov1|scaffold_9585 (3431-3597) | |
| 42-201, gnl|echTel1|scaffold_193244 (1913-1745) | |
| 42-201, gnl|fr1|chrUn (95757558-95757379) | |
| 42-201, gnl|galGal2|chr8 (27739075-27739249) | |
| 42-201, gnl|hg17|chr1 (62682303-62682485) | |
| 42-201, gnl|Hg17|chr1 (62682481-62682322) | |
| 42-201, gnl|loxAfr1|scaffold_82200 (9277-9114) | |
| 42-201, gnl|mm7|chr4 (98358881-98359064) | |
| 42-201, gnl|Mm7|chr4 (98359058-98358899) | |
| 42-201, gnl|monDom2|scaffold_40 (12267729-12267559) | |
| 42-201, gnl|oryCun1|scaffold_189178 (32230-32046) | |
| 42-201, gnl|panTro1|chr1 (61014445-61014627) | |
| 42-201, gnl|rheMac2|chr1 (65312938-65313120) | |
| 42-201, gnl|rn3|chr5 (119413978-119414161) | |
| 42-201, gnl|tetNig1|chr1 (16029643-16029475) | |
| 42-201, gnl|xenTro1|scaffold_1 (2657388-2657217) | |
| 202-363, gnl|bosTau2|chr3 (56512713-56512875) | |
| 202-363, gnl|canFam2|chr5 (50621705-50621500) | |
| 202-363, gnl|danRer3|chr6 (16741453-16741244) | |
| 202-363, gnl|dasNov1|scaffold_97217 (173-4) | |
| 202-363, gnl|echTel1|scaffold_188562 (3140-3340) | |
| 202-363, gnl|fr1|chrUn (95757791-95757612) | |
| 202-363, gnl|galGal2|chr8 (27738491-27738691) | |
| 202-363, gnl|hg17|chr1 (62674009-62674214) | |
| 202-363, gnl|Hg17|chr1 (62674189-62674028) | |
| 202-363, gnl|loxAfr1|scaffold_668 (116837-117042) | |
| 202-363, gnl|mm7|chr4 (98354792-98354985) | |
| 202-363, gnl|Mm7|chr4 (98354966-98354805) | |
| 202-363, gnl|monDom2|scaffold_40 (12268182-12268010) | |
| 202-363, gnl|oryCun1|scaffold_146240 (385-559) | |
| 202-363, gnl|panTro1|chr1 (61005696-61005901) | |
| 202-363, gnl|rheMac2|chr1 (65307291-65307496) | |
| 202-363, gnl|rn3|chr5 (119409210-119409410) | |
| 202-363, gnl|tetNig1|chr1 (16029945-16029763) | |
| 202-363, gnl|xenTro1|scaffold_1 (2659580-2659399) | |
| 451-641, gnl|bosTau2|chr3 (56775726-56775534) | |
| 451-641, gnl|Hg17|chr1 (62672172-62671980) | |
| 451-641, gnl|Mm7|chr4 (98351789-98351597) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 42-201, gnl|bosTau2|chr3 (56506066-56506225) | |
| 42-201, gnl|canFam2|chr5 (50616349-50616175) | |
| 42-201, gnl|danRer3|chr6 (16740674-16740499) | |
| 42-201, gnl|dasNov1|scaffold_9585 (3431-3597) | |
| 42-201, gnl|echTel1|scaffold_193244 (1913-1745) | |
| 42-201, gnl|fr1|chrUn (95757558-95757379) | |
| 42-201, gnl|galGal2|chr8 (27739075-27739249) | |
| 42-201, gnl|hg17|chr1 (62682303-62682485) | |
| 42-201, gnl|Hg17|chr1 (62682481-62682322) | |
| 42-201, gnl|loxAfr1|scaffold_82200 (9277-9114) | |
| 42-201, gnl|mm7|chr4 (98358881-98359064) | |
| 42-201, gnl|Mm7|chr4 (98359058-98358899) | |
| 42-201, gnl|monDom2|scaffold_40 (12267729-12267559) | |
| 42-201, gnl|oryCun1|scaffold_189178 (32230-32046) | |
| 42-201, gnl|panTro1|chr1 (61014445-61014627) | |
| 42-201, gnl|rheMac2|chr1 (65312938-65313120) | |
| 42-201, gnl|rn3|chr5 (119413978-119414161) | |
| 42-201, gnl|tetNig1|chr1 (16029643-16029475) | |
| 42-201, gnl|xenTro1|scaffold_1 (2657388-2657217) | |
| 202-363, gnl|bosTau2|chr3 (56512713-56512875) | |
| 202-363, gnl|canFam2|chr5 (50621705-50621500) | |
| 202-363, gnl|danRer3|chr6 (16741453-16741244) | |
| 202-363, gnl|dasNov1|scaffold_97217 (173-4) | |
| 202-363, gnl|echTel1|scaffold_188562 (3140-3340) | |
| 202-363, gnl|fr1|chrUn (95757791-95757612) | |
| 202-363, gnl|galGal2|chr8 (27738491-27738691) | |
| 202-363, gnl|hg17|chr1 (62674009-62674214) | |
| 202-363, gnl|Hg17|chr1 (62674189-62674028) | |
| 202-363, gnl|loxAfr1|scaffold_668 (116837-117042) | |
| 202-363, gnl|mm7|chr4 (98354792-98354985) | |
| 202-363, gnl|Mm7|chr4 (98354966-98354805) | |
| 202-363, gnl|monDom2|scaffold_40 (12268182-12268010) | |
| 202-363, gnl|oryCun1|scaffold_146240 (385-559) | |
| 202-363, gnl|panTro1|chr1 (61005696-61005901) | |
| 202-363, gnl|rheMac2|chr1 (65307291-65307496) | |
| 202-363, gnl|rn3|chr5 (119409210-119409410) | |
| 202-363, gnl|tetNig1|chr1 (16029945-16029763) | |
| 202-363, gnl|xenTro1|scaffold_1 (2659580-2659399) | |
| 451-641, gnl|bosTau2|chr3 (56775726-56775534) | |
| 451-641, gnl|Hg17|chr1 (62672172-62671980) | |
| 451-641, gnl|Mm7|chr4 (98351789-98351597) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) |