Non-Coding RNA Search

recc2829c_b7.y1

Sequence:


               
               ACTGGAGGAGTGGTAAAGGAGAGGAAGTGTGCAGAGCAGCTGGGGGGCCAGGCATCTCTC
TCTCTTCATGTAGTCTCAGCGCCTCTCCATGGGGTCTCTACACATGGACTAACTTGTGCT
TCCTCACAGCATGGCATCCTCGGGGGGAGTTGGCTAGCATATATGACCTAAAGGCTTCTA
GGGTGAGTATTCCAGTGAGCAAGGCAGAACGCTCCGTCATTTTTTCTTACCTGCCCACAG
AAGTCACACAGTGTCTCTTCCACCTCATTCTGTTGGTTTAAGTCACCTTCACCTCCTAAT
GGGAAGATAGTTAAGATGATATTGTAGGTGAACATGTAGGATGGGAGATAATATTTGCAG
CCATCTTTGAAAATTAAAATCTGCTGCAAATAGGAAACATCAAATAAAGAATCTTCTTAT
CTGAGGTTTGTCCTGTACAAAGCTTTCTAAGTGTTAAAACAGGAATGATCCTTTACCTTT
GGGAGCTTTTATAGTCTGAAGGATACAGAAGACATAAAGTTTTTTTATGTGGGCAATTTT
ATAAATGTTAAAGTCCTATAATTTATATTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGGAGGAGTGGTAAAGGAGAGGAAGTGTGCAGAGCAGCTGGGGGGCCAGGCATCTCTC
TCTCTTCATGTAGTCTCAGCGCCTCTCCATGGGGTCTCTACACATGGACTAACTTGTGCT
TCCTCACAGCATGGCATCCTCGGGGGGAGTTGGCTAGCATATATGACCTAAAGGCTTCTA
GGGTGAGTATTCCAGTGAGCAAGGCAGAACGCTCCGTCATTTTTTCTTACCTGCCCACAG
AAGTCACACAGTGTCTCTTCCACCTCATTCTGTTGGTTTAAGTCACCTTCACCTCCTAAT
GGGAAGATAGTTAAGATGATATTGTAGGTGAACATGTAGGATGGGAGATAATATTTGCAG
CCATCTTTGAAAATTAAAATCTGCTGCAAATAGGAAACATCAAATAAAGAATCTTCTTAT
CTGAGGTTTGTCCTGTACAAAGCTTTCTAAGTGTTAAAACAGGAATGATCCTTTACCTTT
GGGAGCTTTTATAGTCTGAAGGATACAGAAGACATAAAGTTTTTTTATGTGGGCAATTTT
ATAAATGTTAAAGTCCTATAATTTATATTATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               213-433, - strand, RNAz p=0.997433

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-433, - strand, RNAz p=0.997433

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-552, gnl|bosTau2|chr15 (25264757-25265300)
               

               
               1-552, gnl|canFam2|chr21 (39763949-39764607)
               

               
               1-552, gnl|echTel1|scaffold_324552 (104013-103459)
               

               
               1-552, gnl|hg17|chr11 (13696668-13697294)
               

               
               1-552, gnl|Hg17|chr11 (13696929-13697484)
               

               
               1-552, gnl|loxAfr1|scaffold_7156 (29684-30295)
               

               
               1-552, gnl|mm7|chr7 (109474242-109474803)
               

               
               1-552, gnl|oryCun1|scaffold_169050 (16113-15524)
               

               
               1-552, gnl|panTro1|chr9 (13910050-13910674)
               

               
               1-552, gnl|rheMac2|chr14 (58167558-58166932)
               

               
               1-552, gnl|rn3|chr1 (171548552-171549141)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr15 (25264757-25265300)
               

               
               1-552, gnl|canFam2|chr21 (39763949-39764607)
               

               
               1-552, gnl|echTel1|scaffold_324552 (104013-103459)
               

               
               1-552, gnl|hg17|chr11 (13696668-13697294)
               

               
               1-552, gnl|Hg17|chr11 (13696929-13697484)
               

               
               1-552, gnl|loxAfr1|scaffold_7156 (29684-30295)
               

               
               1-552, gnl|mm7|chr7 (109474242-109474803)
               

               
               1-552, gnl|oryCun1|scaffold_169050 (16113-15524)
               

               
               1-552, gnl|panTro1|chr9 (13910050-13910674)
               

               
               1-552, gnl|rheMac2|chr14 (58167558-58166932)
               

               
               1-552, gnl|rn3|chr1 (171548552-171549141)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-552, gnl\|bosTau2\|chr15 (25264757-25265300)
	1-552, gnl\|canFam2\|chr21 (39763949-39764607)
	1-552, gnl\|echTel1\|scaffold_324552 (104013-103459)
	1-552, gnl\|hg17\|chr11 (13696668-13697294)
	1-552, gnl\|Hg17\|chr11 (13696929-13697484)
	1-552, gnl\|loxAfr1\|scaffold_7156 (29684-30295)
	1-552, gnl\|mm7\|chr7 (109474242-109474803)
	1-552, gnl\|oryCun1\|scaffold_169050 (16113-15524)
	1-552, gnl\|panTro1\|chr9 (13910050-13910674)
	1-552, gnl\|rheMac2\|chr14 (58167558-58166932)
	1-552, gnl\|rn3\|chr1 (171548552-171549141)