Non-Coding RNA Search

recc2829c_e11.y1

Sequence:


               
               ATTTAATTCCCTGGTCCCGTCGGGTCTGGCTTGGGGTCCCCCTTCCTCTGTTCCCTTCGT
TTGTCTCCGTCCTTCCCTCTATCGTCTCTGTCTTGTGTCCTTCCCTTTGTCCCAATTTTC
TCTGTCCTGTCGTCCTCTCTTCTCCCTCTGCCGTCCTGTATTTCGTCCAGTCTCCTTGTC
TCTCCTGATTCTCTTCCCAGTACCCATTCTCCGGGGCAGGTCCCACTGGAAGGACCAGAC
TCCCCTATTCCTCTTTCCCCCAAATAAATCCCCACATGAACAAGATCCAAAAACAAATCC
CCCTCCCTACCGGAGCCGGGACCCTCCGCCGCAGGAGAATTAAACTTTTTTCTGTGTCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTAATTCCCTGGTCCCGTCGGGTCTGGCTTGGGGTCCCCCTTCCTCTGTTCCCTTCGT
TTGTCTCCGTCCTTCCCTCTATCGTCTCTGTCTTGTGTCCTTCCCTTTGTCCCAATTTTC
TCTGTCCTGTCGTCCTCTCTTCTCCCTCTGCCGTCCTGTATTTCGTCCAGTCTCCTTGTC
TCTCCTGATTCTCTTCCCAGTACCCATTCTCCGGGGCAGGTCCCACTGGAAGGACCAGAC
TCCCCTATTCCTCTTTCCCCCAAATAAATCCCCACATGAACAAGATCCAAAAACAAATCC
CCCTCCCTACCGGAGCCGGGACCCTCCGCCGCAGGAGAATTAAACTTTTTTCTGTGTCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               146-358, - strand, RNAz p=0.99641
               

               
               201-358, - strand, RNAz p=0.982378

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               146-358, - strand, RNAz p=0.99641
               

               
               201-358, - strand, RNAz p=0.982378

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-358, gnl|bosTau2|chr18 (45599218-45599585)
               

               
               1-358, gnl|canFam2|chr1 (116805910-116805595)
               

               
               1-358, gnl|dasNov1|scaffold_46124 (5320-5006)
               

               
               1-358, gnl|hg17|chr19 (44489212-44489556)
               

               
               1-358, gnl|Hg17|chr19 (44489648-44489301)
               

               
               1-358, gnl|loxAfr1|scaffold_39763 (14484-14803)
               

               
               1-358, gnl|mm7|chr7 (25402176-25401856)
               

               
               1-358, gnl|Mm7|chr7 (25401764-25402123)
               

               
               1-358, gnl|monDom2|scaffold_139 (976504-976837)
               

               
               1-358, gnl|panTro1|chr20_random (17473144-17473481)
               

               
               1-358, gnl|rheMac2|chr19 (45648666-45648991)
               

               
               1-358, gnl|rn3|chr1 (83659419-83659042)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-358, gnl|bosTau2|chr18 (45599218-45599585)
               

               
               1-358, gnl|canFam2|chr1 (116805910-116805595)
               

               
               1-358, gnl|dasNov1|scaffold_46124 (5320-5006)
               

               
               1-358, gnl|hg17|chr19 (44489212-44489556)
               

               
               1-358, gnl|Hg17|chr19 (44489648-44489301)
               

               
               1-358, gnl|loxAfr1|scaffold_39763 (14484-14803)
               

               
               1-358, gnl|mm7|chr7 (25402176-25401856)
               

               
               1-358, gnl|Mm7|chr7 (25401764-25402123)
               

               
               1-358, gnl|monDom2|scaffold_139 (976504-976837)
               

               
               1-358, gnl|panTro1|chr20_random (17473144-17473481)
               

               
               1-358, gnl|rheMac2|chr19 (45648666-45648991)
               

               
               1-358, gnl|rn3|chr1 (83659419-83659042)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	146-358, - strand, RNAz p=0.99641
	201-358, - strand, RNAz p=0.982378

	1-358, gnl\|bosTau2\|chr18 (45599218-45599585)
	1-358, gnl\|canFam2\|chr1 (116805910-116805595)
	1-358, gnl\|dasNov1\|scaffold_46124 (5320-5006)
	1-358, gnl\|hg17\|chr19 (44489212-44489556)
	1-358, gnl\|Hg17\|chr19 (44489648-44489301)
	1-358, gnl\|loxAfr1\|scaffold_39763 (14484-14803)
	1-358, gnl\|mm7\|chr7 (25402176-25401856)
	1-358, gnl\|Mm7\|chr7 (25401764-25402123)
	1-358, gnl\|monDom2\|scaffold_139 (976504-976837)
	1-358, gnl\|panTro1\|chr20_random (17473144-17473481)
	1-358, gnl\|rheMac2\|chr19 (45648666-45648991)
	1-358, gnl\|rn3\|chr1 (83659419-83659042)