Non-Coding RNA Search

recc2829c_m7.y1

Sequence:


               
               GAACGGAGTGACAGTAAGCAGGACAAATCGCGGCTGAATGAGACCACGGAGACCCAGAGG
ACCCTCCTCAATGGAGACCTCCAGACCAGTATCTGAACTGCCTGAACATTCAATCCAGAA
AATGCCCCAGTGCTGCCCAATGGCCATGTGCTCCCCACCCCCACCCCTTCCTTCCTCTCA
CCCATCACACCTGGCTTCTAGAATAGGGACTTAATCGCTCAGCATGAGTCCATTTCAGAG
AACAATGTTTGAGTCGGCTTGTCTGAGTGAATGATAATGTCTTAAATTGATTACCCTCCC
CCAAAAGCGAACATTTCCATGCAGACAGACTATTCAGCTCATGCCTGGGTGTGATCTTTA
GAAATACGGAGGCTCAGCAAAAAGAGAAAACGCTACCCCTGTGTTTGTGTGTTTAAAACC
CAATAGATAATCTTGTGGTCTCACATTTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACGGAGTGACAGTAAGCAGGACAAATCGCGGCTGAATGAGACCACGGAGACCCAGAGG
ACCCTCCTCAATGGAGACCTCCAGACCAGTATCTGAACTGCCTGAACATTCAATCCAGAA
AATGCCCCAGTGCTGCCCAATGGCCATGTGCTCCCCACCCCCACCCCTTCCTTCCTCTCA
CCCATCACACCTGGCTTCTAGAATAGGGACTTAATCGCTCAGCATGAGTCCATTTCAGAG
AACAATGTTTGAGTCGGCTTGTCTGAGTGAATGATAATGTCTTAAATTGATTACCCTCCC
CCAAAAGCGAACATTTCCATGCAGACAGACTATTCAGCTCATGCCTGGGTGTGATCTTTA
GAAATACGGAGGCTCAGCAAAAAGAGAAAACGCTACCCCTGTGTTTGTGTGTTTAAAACC
CAATAGATAATCTTGTGGTCTCACATTTATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, - strand, RNAz p=0.651766

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.651766

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-449, gnl|bosTau2|chr19 (52697898-52697441)
               

               
               1-449, gnl|Hg17|chr17 (68678068-68678522)
               

               
               1-449, gnl|Mm7|chr11 (113734316-113734789)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-449, gnl|bosTau2|chr19 (52697898-52697441)
               

               
               1-449, gnl|Hg17|chr17 (68678068-68678522)
               

               
               1-449, gnl|Mm7|chr11 (113734316-113734789)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-449, gnl\|bosTau2\|chr19 (52697898-52697441)
	1-449, gnl\|Hg17\|chr17 (68678068-68678522)
	1-449, gnl\|Mm7\|chr11 (113734316-113734789)