Non-Coding RNA Search

recc2831c_j9.y1

Sequence:


               
               GGCGGTGCCAGTGCGCGAGGCCCGCAGCGTCGTCGAGGCAGAGGAGCAGGTGAAGAGCGT
TCTGACGTGGGAGCCTCGTGGTAACTACACCGGGGAGAAAGACGGCCCACCAGCAGCTGG
AGAAGATGAGACCTCGCGGACTGTGCCCCATGGCGAGCACGACGTGGTGAGCCCTGGAAT
TGGGCCAGAGGAGGCGCTGGAGGCGTCGGCTGCCGTGACAGGAACAGCCTGGCTGGAGAC
TGACACCCCAGGCTTGAGTGGAGTGACTGCAGAGGCAGGCAGTGGAGACACCCAGGCACT
TCCAGCCACGCTCCCGACTCCTGATGAGGCTCTTGGGCAGTTGCCATCCACCGCCACCCC
TGAGGCTACAGAGGCCAGCGAACCACCCTCCTCCACCCCTGGCGACAAGCTGAACCCAGG
CCCTGAGGTACCCAAGGAGAGCCCCTTGGAGGTTTGGCTGAACCTGGGAGGCAGCACCCC
TGACCCTCATGGGCCAGAGCCCACGTACCCCTTTCAGGGCACACTGGAGCCCCACCCAGC
GTCAGACATAATTGACATCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGTGCCAGTGCGCGAGGCCCGCAGCGTCGTCGAGGCAGAGGAGCAGGTGAAGAGCGT
TCTGACGTGGGAGCCTCGTGGTAACTACACCGGGGAGAAAGACGGCCCACCAGCAGCTGG
AGAAGATGAGACCTCGCGGACTGTGCCCCATGGCGAGCACGACGTGGTGAGCCCTGGAAT
TGGGCCAGAGGAGGCGCTGGAGGCGTCGGCTGCCGTGACAGGAACAGCCTGGCTGGAGAC
TGACACCCCAGGCTTGAGTGGAGTGACTGCAGAGGCAGGCAGTGGAGACACCCAGGCACT
TCCAGCCACGCTCCCGACTCCTGATGAGGCTCTTGGGCAGTTGCCATCCACCGCCACCCC
TGAGGCTACAGAGGCCAGCGAACCACCCTCCTCCACCCCTGGCGACAAGCTGAACCCAGG
CCCTGAGGTACCCAAGGAGAGCCCCTTGGAGGTTTGGCTGAACCTGGGAGGCAGCACCCC
TGACCCTCATGGGCCAGAGCCCACGTACCCCTTTCAGGGCACACTGGAGCCCCACCCAGC
GTCAGACATAATTGACATCGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               405-524, - strand, RNAz p=0.940729

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               405-524, - strand, RNAz p=0.940729

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-561, gnl|bosTau2|chr26 (19206966-19207521)
               

               
               9-561, gnl|Hg17|chr3 (47594425-47593888)
               

               
               9-561, gnl|Mm7|chr9 (109943151-109943691)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-561, gnl|bosTau2|chr26 (19206966-19207521)
               

               
               9-561, gnl|Hg17|chr3 (47594425-47593888)
               

               
               9-561, gnl|Mm7|chr9 (109943151-109943691)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	9-561, gnl\|bosTau2\|chr26 (19206966-19207521)
	9-561, gnl\|Hg17\|chr3 (47594425-47593888)
	9-561, gnl\|Mm7\|chr9 (109943151-109943691)