recc2832c_d20.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCCGGGCGCCGCCGCCGCCGCCGCCGAGGCTTCCGTCTCGCTCGCTCGCGCCGCGGCG GCAGCAGAGGTCGCGCACAGATGCGGGTTAGACTGGCGGGGGGAGGAGGCGGAGGAGGGA AGGAAGCTGCATGCATGAGACCCACAGACTCTTGCAAGCCGGATGCCCTCTGTGGATGAA AGATGTATCATGGAATGAACCCGAGCAATGGAGATGGATTTCTAGAGCAGCAGCAGCAGC CTCAATCCCCCCAGAGACTCTTGGCCGTGATCCTGTGGTTTCAGCTGGCTCTGTGCTTCG GCCCTGCACAGCTCACGGGTGGGTTCGATGAGCTTCAGGTGTGCGCCGACCCAGGCGTCC CCGAGAATGGCTTCAGGACGCCCAGCGGAGGGGTTTTCTTTGAAAGCTCTGTCACTCGGT TCCACTGCCAAGACGGATTCAAGCTGAAGGGCTCTACAAAGAGACTGTGTATGAAACACC TGAACGGAACCCTCGGCTGGGTCCCAAGTGATAAGCCCGTCTGTGTGCAGGAAGATTGCC GTATCCCGCAAATCGAAGATGCTGAGATTCATAACAAGACATACAGACATGGAGACAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCCGGGCGCCGCCGCCGCCGCCGCCGAGGCTTCCGTCTCGCTCGCTCGCGCCGCGGCG GCAGCAGAGGTCGCGCACAGATGCGGGTTAGACTGGCGGGGGGAGGAGGCGGAGGAGGGA AGGAAGCTGCATGCATGAGACCCACAGACTCTTGCAAGCCGGATGCCCTCTGTGGATGAA AGATGTATCATGGAATGAACCCGAGCAATGGAGATGGATTTCTAGAGCAGCAGCAGCAGC CTCAATCCCCCCAGAGACTCTTGGCCGTGATCCTGTGGTTTCAGCTGGCTCTGTGCTTCG GCCCTGCACAGCTCACGGGTGGGTTCGATGAGCTTCAGGTGTGCGCCGACCCAGGCGTCC CCGAGAATGGCTTCAGGACGCCCAGCGGAGGGGTTTTCTTTGAAAGCTCTGTCACTCGGT TCCACTGCCAAGACGGATTCAAGCTGAAGGGCTCTACAAAGAGACTGTGTATGAAACACC TGAACGGAACCCTCGGCTGGGTCCCAAGTGATAAGCCCGTCTGTGTGCAGGAAGATTGCC GTATCCCGCAAATCGAAGATGCTGAGATTCATAACAAGACATACAGACATGGAGACAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 417-534, - strand, RNAz p=0.867212 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 417-534, - strand, RNAz p=0.867212 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 321-534, gnl|bosTau2|chr16 (14228213-14228000) | |
| 321-534, gnl|danRer3|chrUn (183201248-183201067) | |
| 321-534, gnl|danRer3|chrUn (183201248-183201067) | |
| 321-534, gnl|dasNov1|scaffold_49378 (649-468) | |
| 321-534, gnl|dasNov1|scaffold_49378 (649-468) | |
| 321-534, gnl|echTel1|scaffold_289149 (173966-173785) | |
| 321-534, gnl|echTel1|scaffold_289149 (173966-173785) | |
| 321-534, gnl|galGal2|chr3 (14144529-14144348) | |
| 321-534, gnl|galGal2|chr3 (14144529-14144348) | |
| 321-534, gnl|hg17|chr1 (219837557-219837738) | |
| 321-534, gnl|Hg17|chr1 (219837773-219837560) | |
| 321-534, gnl|hg17|chr1_random (3081419-3081600) | |
| 321-534, gnl|loxAfr1|scaffold_31880 (3451-3270) | |
| 321-534, gnl|loxAfr1|scaffold_31880 (3451-3270) | |
| 321-534, gnl|mm7|chr1 (182820300-182820119) | |
| 321-534, gnl|mm7|chr1 (182820300-182820119) | |
| 321-534, gnl|Mm7|chr1 (182820082-182820295) | |
| 321-534, gnl|monDom2|scaffold_13 (30385838-30386019) | |
| 321-534, gnl|monDom2|scaffold_13 (30385838-30386019) | |
| 321-534, gnl|oryCun1|scaffold_176449 (44989-45170) | |
| 321-534, gnl|oryCun1|scaffold_176449 (44989-45170) | |
| 321-534, gnl|panTro1|chr1 (203768047-203768228) | |
| 321-534, gnl|panTro1|chr1 (203768047-203768228) | |
| 321-534, gnl|rheMac2|chr1 (146958831-146958650) | |
| 321-534, gnl|rheMac2|chr1 (146958831-146958650) | |
| 321-534, gnl|rn3|chr13 (99089190-99089009) | |
| 321-534, gnl|rn3|chr13 (99089190-99089009) | |
| 321-534, gnl|xenTro1|scaffold_759 (14393-14212) | |
| 321-534, gnl|xenTro1|scaffold_759 (14393-14212) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 321-534, gnl|bosTau2|chr16 (14228213-14228000) | |
| 321-534, gnl|danRer3|chrUn (183201248-183201067) | |
| 321-534, gnl|danRer3|chrUn (183201248-183201067) | |
| 321-534, gnl|dasNov1|scaffold_49378 (649-468) | |
| 321-534, gnl|dasNov1|scaffold_49378 (649-468) | |
| 321-534, gnl|echTel1|scaffold_289149 (173966-173785) | |
| 321-534, gnl|echTel1|scaffold_289149 (173966-173785) | |
| 321-534, gnl|galGal2|chr3 (14144529-14144348) | |
| 321-534, gnl|galGal2|chr3 (14144529-14144348) | |
| 321-534, gnl|hg17|chr1 (219837557-219837738) | |
| 321-534, gnl|Hg17|chr1 (219837773-219837560) | |
| 321-534, gnl|hg17|chr1_random (3081419-3081600) | |
| 321-534, gnl|loxAfr1|scaffold_31880 (3451-3270) | |
| 321-534, gnl|loxAfr1|scaffold_31880 (3451-3270) | |
| 321-534, gnl|mm7|chr1 (182820300-182820119) | |
| 321-534, gnl|mm7|chr1 (182820300-182820119) | |
| 321-534, gnl|Mm7|chr1 (182820082-182820295) | |
| 321-534, gnl|monDom2|scaffold_13 (30385838-30386019) | |
| 321-534, gnl|monDom2|scaffold_13 (30385838-30386019) | |
| 321-534, gnl|oryCun1|scaffold_176449 (44989-45170) | |
| 321-534, gnl|oryCun1|scaffold_176449 (44989-45170) | |
| 321-534, gnl|panTro1|chr1 (203768047-203768228) | |
| 321-534, gnl|panTro1|chr1 (203768047-203768228) | |
| 321-534, gnl|rheMac2|chr1 (146958831-146958650) | |
| 321-534, gnl|rheMac2|chr1 (146958831-146958650) | |
| 321-534, gnl|rn3|chr13 (99089190-99089009) | |
| 321-534, gnl|rn3|chr13 (99089190-99089009) | |
| 321-534, gnl|xenTro1|scaffold_759 (14393-14212) | |
| 321-534, gnl|xenTro1|scaffold_759 (14393-14212) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) |