Non-Coding RNA Search

recc2833c_p12.y1

Sequence:


               
               GTCTGGGCCACTTGAGGCTGCTCCCTGAAAGGCACTACAACCCGGGGTGGGGTGGCGCGG
GGGTGGGGTGAGGGTGGGCAGAGGGCGGGGAGGGGCTGCTCCTGTTGGTGCAACTCTGTT
CACACCTTTTCTAATAAACCAGAGCTGCGTTCaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTGGGCCACTTGAGGCTGCTCCCTGAAAGGCACTACAACCCGGGGTGGGGTGGCGCGG
GGGTGGGGTGAGGGTGGGCAGAGGGCGGGGAGGGGCTGCTCCTGTTGGTGCAACTCTGTT
CACACCTTTTCTAATAAACCAGAGCTGCGTTCaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaa

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-152, gnl|bosTau2|chr18 (38715047-38714896)
               

               
               1-152, gnl|canFam2|chr1 (113243034-113242873)
               

               
               1-152, gnl|echTel1|scaffold_178535 (849-704)
               

               
               1-152, gnl|hg17|chr19 (50342179-50342336)
               

               
               1-152, gnl|Hg17|chr19 (50342228-50342377)
               

               
               1-152, gnl|loxAfr1|scaffold_70862 (1846-1689)
               

               
               1-152, gnl|mm7|chr7 (17213361-17213214)
               

               
               1-152, gnl|Mm7|chr7 (17213311-17213175)
               

               
               1-152, gnl|monDom2|scaffold_221 (14944-14751)
               

               
               1-152, gnl|panTro1|chr20 (47484331-47484488)
               

               
               1-152, gnl|rheMac2|chr19 (51575123-51575286)
               

               
               1-152, gnl|rn3|chr1 (78962542-78962396)
               

               
               1-152, gnl|xenTro1|scaffold_7204 (2205-2378)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-152, gnl|bosTau2|chr18 (38715047-38714896)
               

               
               1-152, gnl|canFam2|chr1 (113243034-113242873)
               

               
               1-152, gnl|echTel1|scaffold_178535 (849-704)
               

               
               1-152, gnl|hg17|chr19 (50342179-50342336)
               

               
               1-152, gnl|Hg17|chr19 (50342228-50342377)
               

               
               1-152, gnl|loxAfr1|scaffold_70862 (1846-1689)
               

               
               1-152, gnl|mm7|chr7 (17213361-17213214)
               

               
               1-152, gnl|Mm7|chr7 (17213311-17213175)
               

               
               1-152, gnl|monDom2|scaffold_221 (14944-14751)
               

               
               1-152, gnl|panTro1|chr20 (47484331-47484488)
               

               
               1-152, gnl|rheMac2|chr19 (51575123-51575286)
               

               
               1-152, gnl|rn3|chr1 (78962542-78962396)
               

               
               1-152, gnl|xenTro1|scaffold_7204 (2205-2378)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-152, gnl\|bosTau2\|chr18 (38715047-38714896)
	1-152, gnl\|canFam2\|chr1 (113243034-113242873)
	1-152, gnl\|echTel1\|scaffold_178535 (849-704)
	1-152, gnl\|hg17\|chr19 (50342179-50342336)
	1-152, gnl\|Hg17\|chr19 (50342228-50342377)
	1-152, gnl\|loxAfr1\|scaffold_70862 (1846-1689)
	1-152, gnl\|mm7\|chr7 (17213361-17213214)
	1-152, gnl\|Mm7\|chr7 (17213311-17213175)
	1-152, gnl\|monDom2\|scaffold_221 (14944-14751)
	1-152, gnl\|panTro1\|chr20 (47484331-47484488)
	1-152, gnl\|rheMac2\|chr19 (51575123-51575286)
	1-152, gnl\|rn3\|chr1 (78962542-78962396)
	1-152, gnl\|xenTro1\|scaffold_7204 (2205-2378)