Non-Coding RNA Search

recc2834c_g15.y1

Sequence:


               
               CTGCAGTCACTCCTCGTGCTTTATTGCTTTTACAAGTGGTCTCGAAACCCAGTACTTGAG
AATAAACATAACAGTGCAGTGCTGCTGTAGCACTTTTAAAAATTCTTCTTTGCTCTATTT
TGTCAGTGAGCTGATGAGCAACCTCAAAAAAAAAAAAAAAAAAAAAAAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAGTCACTCCTCGTGCTTTATTGCTTTTACAAGTGGTCTCGAAACCCAGTACTTGAG
AATAAACATAACAGTGCAGTGCTGCTGTAGCACTTTTAAAAATTCTTCTTTGCTCTATTT
TGTCAGTGAGCTGATGAGCAACCTCAAAAAAAAAAAAAAAAAAAAAAAAAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-165, - strand, RNAz p=0.805346

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-165, - strand, RNAz p=0.805346

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-165, gnl|bosTau2|chr13 (25831525-25831361)
               

               
               1-165, gnl|canFam2|chr24 (5185550-5185272)
               

               
               1-165, gnl|danRer3|chr17 (48367755-48367512)
               

               
               1-165, gnl|echTel1|scaffold_40377 (780-1049)
               

               
               1-165, gnl|fr1|chrUn (306447704-306447397)
               

               
               1-165, gnl|galGal2|chr3 (3477776-3477532)
               

               
               1-165, gnl|hg17|chr20 (21163160-21163433)
               

               
               1-165, gnl|Hg17|chr20 (21163236-21163399)
               

               
               1-165, gnl|loxAfr1|scaffold_23240 (20690-20952)
               

               
               1-165, gnl|mm7|chr2 (146698978-146699249)
               

               
               1-165, gnl|Mm7|chr2 (146699055-146699219)
               

               
               1-165, gnl|monDom2|scaffold_1 (56926121-56926374)
               

               
               1-165, gnl|oryCun1|scaffold_205907 (47836-48123)
               

               
               1-165, gnl|panTro1|chr21 (21086029-21086304)
               

               
               1-165, gnl|rheMac2|chr10 (54528424-54528690)
               

               
               1-165, gnl|rn3|chr3 (135490624-135490896)
               

               
               1-165, gnl|tetNig1|chrUn_random (166471734-166472042)
               

               
               1-165, gnl|xenTro1|scaffold_352 (430186-429944)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-165, gnl|bosTau2|chr13 (25831525-25831361)
               

               
               1-165, gnl|canFam2|chr24 (5185550-5185272)
               

               
               1-165, gnl|danRer3|chr17 (48367755-48367512)
               

               
               1-165, gnl|echTel1|scaffold_40377 (780-1049)
               

               
               1-165, gnl|fr1|chrUn (306447704-306447397)
               

               
               1-165, gnl|galGal2|chr3 (3477776-3477532)
               

               
               1-165, gnl|hg17|chr20 (21163160-21163433)
               

               
               1-165, gnl|Hg17|chr20 (21163236-21163399)
               

               
               1-165, gnl|loxAfr1|scaffold_23240 (20690-20952)
               

               
               1-165, gnl|mm7|chr2 (146698978-146699249)
               

               
               1-165, gnl|Mm7|chr2 (146699055-146699219)
               

               
               1-165, gnl|monDom2|scaffold_1 (56926121-56926374)
               

               
               1-165, gnl|oryCun1|scaffold_205907 (47836-48123)
               

               
               1-165, gnl|panTro1|chr21 (21086029-21086304)
               

               
               1-165, gnl|rheMac2|chr10 (54528424-54528690)
               

               
               1-165, gnl|rn3|chr3 (135490624-135490896)
               

               
               1-165, gnl|tetNig1|chrUn_random (166471734-166472042)
               

               
               1-165, gnl|xenTro1|scaffold_352 (430186-429944)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-165, gnl\|bosTau2\|chr13 (25831525-25831361)
	1-165, gnl\|canFam2\|chr24 (5185550-5185272)
	1-165, gnl\|danRer3\|chr17 (48367755-48367512)
	1-165, gnl\|echTel1\|scaffold_40377 (780-1049)
	1-165, gnl\|fr1\|chrUn (306447704-306447397)
	1-165, gnl\|galGal2\|chr3 (3477776-3477532)
	1-165, gnl\|hg17\|chr20 (21163160-21163433)
	1-165, gnl\|Hg17\|chr20 (21163236-21163399)
	1-165, gnl\|loxAfr1\|scaffold_23240 (20690-20952)
	1-165, gnl\|mm7\|chr2 (146698978-146699249)
	1-165, gnl\|Mm7\|chr2 (146699055-146699219)
	1-165, gnl\|monDom2\|scaffold_1 (56926121-56926374)
	1-165, gnl\|oryCun1\|scaffold_205907 (47836-48123)
	1-165, gnl\|panTro1\|chr21 (21086029-21086304)
	1-165, gnl\|rheMac2\|chr10 (54528424-54528690)
	1-165, gnl\|rn3\|chr3 (135490624-135490896)
	1-165, gnl\|tetNig1\|chrUn_random (166471734-166472042)
	1-165, gnl\|xenTro1\|scaffold_352 (430186-429944)