Non-Coding RNA Search

recc2835c_p8.y1

Sequence:


               
               ATGCGATGGTTTAGGGGTCACCTCTAACTGAGAGGTTGGGTCCTAGGTCGGTGGGGTGAT
GATGGGTACTCCTTGACGGGGACTATTTTGCCTCTTCTGCCCCAGTGCCTCAGCCCCACC
CGATTATTTTATTTTATTTTCTATTTATAAATTGTAATATAATGACCTACTTGCCCAGCC
TGGCAAGATGAGGAGCTGGGGCACAGCGTTAACACTGTCTGACACAGGAGCCAATCTGAC
ATTTTCCTACAGGTGGGCTAATAAAGGGAAAACTTCCAGGAAAAAAAAAAAAAAAAAAAA
AAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCGATGGTTTAGGGGTCACCTCTAACTGAGAGGTTGGGTCCTAGGTCGGTGGGGTGAT
GATGGGTACTCCTTGACGGGGACTATTTTGCCTCTTCTGCCCCAGTGCCTCAGCCCCACC
CGATTATTTTATTTTATTTTCTATTTATAAATTGTAATATAATGACCTACTTGCCCAGCC
TGGCAAGATGAGGAGCTGGGGCACAGCGTTAACACTGTCTGACACAGGAGCCAATCTGAC
ATTTTCCTACAGGTGGGCTAATAAAGGGAAAACTTCCAGGAAAAAAAAAAAAAAAAAAAA
AAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               86-205, - strand, RNAz p=0.99886

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-205, - strand, RNAz p=0.99886

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               101-165, DKFZp564B0264_r1 564 (synonym (emb|AL036920.3|), blast 
E-value=0.000000000002, identity=89.23% 
               

               
               131-180, BX516501 Soares_mammary_gland_NMLMG Mus musculus cDNA clone 
(emb|BX516501.1|), blast E-value=0.00000000003, identity=94% 
               

               
               100-203, zm13f08.r1 Stratagene pancreas (#937208) Homo sapiens cDNA clone 
(gb|AA064707.1|), blast E-value=5e-22, identity=88.46% 
               

               
               100-203, wb07b04.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE (gb|AI651598.1|), 
blast E-value=5e-22, identity=88.46% 
               

               
               131-180, H3042B09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone 
(gb|BG079583.2|), blast E-value=0.00000000003, identity=94% 
               

               
               90-193, GL-Cf-11826 GLGC-LIB0001-cf Canis familiaris Normalized Mixed 
(gb|DN755030.1|), blast E-value=3e-36, identity=94.23%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               101-165, DKFZp564B0264_r1 564 (synonym (emb|AL036920.3|), blast 
E-value=0.000000000002, identity=89.23% 
               

               
               131-180, BX516501 Soares_mammary_gland_NMLMG Mus musculus cDNA clone 
(emb|BX516501.1|), blast E-value=0.00000000003, identity=94% 
               

               
               100-203, zm13f08.r1 Stratagene pancreas (#937208) Homo sapiens cDNA clone 
(gb|AA064707.1|), blast E-value=5e-22, identity=88.46% 
               

               
               100-203, wb07b04.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE (gb|AI651598.1|), 
blast E-value=5e-22, identity=88.46% 
               

               
               131-180, H3042B09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone 
(gb|BG079583.2|), blast E-value=0.00000000003, identity=94% 
               

               
               90-193, GL-Cf-11826 GLGC-LIB0001-cf Canis familiaris Normalized Mixed 
(gb|DN755030.1|), blast E-value=3e-36, identity=94.23%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-235, gnl|bosTau2|chr5 (22372953-22373188)
               

               
               1-235, gnl|Hg17|chr12 (47769778-47769503)
               

               
               1-235, gnl|Mm7|chr15 (98879064-98878766)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-235, gnl|bosTau2|chr5 (22372953-22373188)
               

               
               1-235, gnl|Hg17|chr12 (47769778-47769503)
               

               
               1-235, gnl|Mm7|chr15 (98879064-98878766)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	101-165, DKFZp564B0264_r1 564 (synonym (emb\|AL036920.3\|), blast E-value=0.000000000002, identity=89.23%
	131-180, BX516501 Soares_mammary_gland_NMLMG Mus musculus cDNA clone (emb\|BX516501.1\|), blast E-value=0.00000000003, identity=94%
	100-203, zm13f08.r1 Stratagene pancreas (#937208) Homo sapiens cDNA clone (gb\|AA064707.1\|), blast E-value=5e-22, identity=88.46%
	100-203, wb07b04.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE (gb\|AI651598.1\|), blast E-value=5e-22, identity=88.46%
	131-180, H3042B09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone (gb\|BG079583.2\|), blast E-value=0.00000000003, identity=94%
	90-193, GL-Cf-11826 GLGC-LIB0001-cf Canis familiaris Normalized Mixed (gb\|DN755030.1\|), blast E-value=3e-36, identity=94.23%

	1-235, gnl\|bosTau2\|chr5 (22372953-22373188)
	1-235, gnl\|Hg17\|chr12 (47769778-47769503)
	1-235, gnl\|Mm7\|chr15 (98879064-98878766)