Non-Coding RNA Search

rece06c_f5.y1

Sequence:


               
               AATTTTACAGGTAGAAAGGAAAGAGTCTAATATAACCTGTAGCAGACCAGAGATGACCTC
GTGTGTTTATACAGGATCAATAATACCTAATACTGCCTCTCTTCTTTTAATAAATGGGGA
GTCATTCAAGATATTTTTTGATGATTTGTAGTAAATTAGGCCCCATGTCATCTACTTAGG
ATGCCAAGAAGATGATGTCTCTGTTTCAGTGGATTCTGATCATAGTTGGAGATAATAGAC
CAGTAAACAGATAAATTATGGTACAACCAGATATGACTGATAAAAGCAGGCAAAACATTA
GGGAGTAAAATTCTGCCTTAAATTTTGAACAAGGCTTGAATTTGAATTGATGGGCAGAGT
TTGGCAGTTGAAGGAAAATGTTCCAAGGTAAGAGAACAGCATGTGGAAAGGCCTGTAGTT
TTGCTTTGTAAACTGTAATTAGAAATGGATTCTACgagttctctggtgtctcagtgggtt
aaggatccagcattgccattggttttgggttgctgctgtggctagggtttgatccctggc
ctgggaacttccacatgccacaggtgtgaccaaa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTTACAGGTAGAAAGGAAAGAGTCTAATATAACCTGTAGCAGACCAGAGATGACCTC
GTGTGTTTATACAGGATCAATAATACCTAATACTGCCTCTCTTCTTTTAATAAATGGGGA
GTCATTCAAGATATTTTTTGATGATTTGTAGTAAATTAGGCCCCATGTCATCTACTTAGG
ATGCCAAGAAGATGATGTCTCTGTTTCAGTGGATTCTGATCATAGTTGGAGATAATAGAC
CAGTAAACAGATAAATTATGGTACAACCAGATATGACTGATAAAAGCAGGCAAAACATTA
GGGAGTAAAATTCTGCCTTAAATTTTGAACAAGGCTTGAATTTGAATTGATGGGCAGAGT
TTGGCAGTTGAAGGAAAATGTTCCAAGGTAAGAGAACAGCATGTGGAAAGGCCTGTAGTT
TTGCTTTGTAAACTGTAATTAGAAATGGATTCTACgagttctctggtgtctcagtgggtt
aaggatccagcattgccattggttttgggttgctgctgtggctagggtttgatccctggc
ctgggaacttccacatgccacaggtgtgaccaaa

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-322, gnl|bosTau2|chr1 (36600390-36600066)
               

               
               1-322, gnl|Hg17|chr3 (117930284-117929931)
               


               
               342-450, gnl|bosTau2|chr1 (36599100-36598993)
               

               
               342-450, gnl|canFam2|chr33 (23759988-23760187)
               

               
               342-450, gnl|dasNov1|scaffold_8568 (19234-19021)
               

               
               342-450, gnl|hg17|chr3 (117929747-117929931)
               

               
               342-450, gnl|Hg17|chr3 (117929912-117929823)
               

               
               342-450, gnl|oryCun1|scaffold_203663 (146813-146613)
               

               
               342-450, gnl|panTro1|chr2 (119658198-119658382)
               

               
               342-450, gnl|rheMac2|chr2 (36746057-36746241)
               

               
               342-450, gnl|rn3|chr11 (61171055-61171268)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-322, gnl|bosTau2|chr1 (36600390-36600066)
               

               
               1-322, gnl|Hg17|chr3 (117930284-117929931)
               


               
               342-450, gnl|bosTau2|chr1 (36599100-36598993)
               

               
               342-450, gnl|canFam2|chr33 (23759988-23760187)
               

               
               342-450, gnl|dasNov1|scaffold_8568 (19234-19021)
               

               
               342-450, gnl|hg17|chr3 (117929747-117929931)
               

               
               342-450, gnl|Hg17|chr3 (117929912-117929823)
               

               
               342-450, gnl|oryCun1|scaffold_203663 (146813-146613)
               

               
               342-450, gnl|panTro1|chr2 (119658198-119658382)
               

               
               342-450, gnl|rheMac2|chr2 (36746057-36746241)
               

               
               342-450, gnl|rn3|chr11 (61171055-61171268)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	1-322, gnl\|bosTau2\|chr1 (36600390-36600066)
	1-322, gnl\|Hg17\|chr3 (117930284-117929931)

	342-450, gnl\|bosTau2\|chr1 (36599100-36598993)
	342-450, gnl\|canFam2\|chr33 (23759988-23760187)
	342-450, gnl\|dasNov1\|scaffold_8568 (19234-19021)
	342-450, gnl\|hg17\|chr3 (117929747-117929931)
	342-450, gnl\|Hg17\|chr3 (117929912-117929823)
	342-450, gnl\|oryCun1\|scaffold_203663 (146813-146613)
	342-450, gnl\|panTro1\|chr2 (119658198-119658382)
	342-450, gnl\|rheMac2\|chr2 (36746057-36746241)
	342-450, gnl\|rn3\|chr11 (61171055-61171268)