Non-Coding RNA Search

rece06c_f9.y1

Sequence:


               
               AAGATCACGCTCAACTCTGAGGAGTGAGATTGGGAGAGTTGAGGCTCAGGAAAAGGGAGA
CAGAGTATAGGGGTACCGTTGTGTGACCAGTGCTGACTGGCTCTGGATGGGGGTACTGCT
ATGTGTTCTGGGACCCAGAAGACCAGACTCCTGGAGCATATGAGGGAGTGAGGACAACAC
AAGGGCCCCCTTTGACTGGGTCCCAAGGCTAGTCTGCCATCCAGTCTGCTCTAGGCCAGC
TGGTGGTCACAGCGACCCCAGCCATTGGGGCACAACACACTGAGTTCTTGAGCAGAGCTT
GGGAGAACTTTATCTTGGTCCTGCCTTCATGCCCCCTAGAGAACTAATGTAGTAATGGTG
CCATCGGCTCATACTTCTCCCTCCTATATTCATTCATTCATGTATCCTACATGCATTTAT
TGAGCACCAACTATGTGCCAAGTCTCTATCAGGCACTGGTATACAGTGATGAACAAGACG
AGATCCCTGCTGCCAGGAGCATTTGTCACTGTCCCTATGCACTGACGCCCACCCTTTAAA
AAATGGTCACTCTGCCATCATGCTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATCACGCTCAACTCTGAGGAGTGAGATTGGGAGAGTTGAGGCTCAGGAAAAGGGAGA
CAGAGTATAGGGGTACCGTTGTGTGACCAGTGCTGACTGGCTCTGGATGGGGGTACTGCT
ATGTGTTCTGGGACCCAGAAGACCAGACTCCTGGAGCATATGAGGGAGTGAGGACAACAC
AAGGGCCCCCTTTGACTGGGTCCCAAGGCTAGTCTGCCATCCAGTCTGCTCTAGGCCAGC
TGGTGGTCACAGCGACCCCAGCCATTGGGGCACAACACACTGAGTTCTTGAGCAGAGCTT
GGGAGAACTTTATCTTGGTCCTGCCTTCATGCCCCCTAGAGAACTAATGTAGTAATGGTG
CCATCGGCTCATACTTCTCCCTCCTATATTCATTCATTCATGTATCCTACATGCATTTAT
TGAGCACCAACTATGTGCCAAGTCTCTATCAGGCACTGGTATACAGTGATGAACAAGACG
AGATCCCTGCTGCCAGGAGCATTTGTCACTGTCCCTATGCACTGACGCCCACCCTTTAAA
AAATGGTCACTCTGCCATCATGCTGGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               119-226, + strand, RNAz p=0.658714

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-226, + strand, RNAz p=0.658714

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-555, gnl|bosTau2|chr10 (61846958-61846392)
               

               
               9-555, gnl|Hg17|chr14 (76668382-76667805)
               

               
               9-555, gnl|Mm7|chr12 (84984316-84983779)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-555, gnl|bosTau2|chr10 (61846958-61846392)
               

               
               9-555, gnl|Hg17|chr14 (76668382-76667805)
               

               
               9-555, gnl|Mm7|chr12 (84984316-84983779)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	9-555, gnl\|bosTau2\|chr10 (61846958-61846392)
	9-555, gnl\|Hg17\|chr14 (76668382-76667805)
	9-555, gnl\|Mm7\|chr12 (84984316-84983779)