Non-Coding RNA Search

rece10c_k9.y1

Sequence:


               
               ATGAATGGATCTTTATTATTAGCCATGTGGTTAACCAGCTTCTCTGAATTTCAAGTGCTT
GTTTTTTAAAGAATAAGATAACATCTATTAATGTAGGTGTTATTAGGGTTAAGTTAGATT
ATGCATAAACTTTTATAAAGTGGAAGTTACATTTAATTAAAAGTTTTTGAACTTTACTCT
GAAAAGGTACAGAATTTATCTTTTTCCTTATGGGATTTTTTTAAAAAAGAAGTACTAAAA
TGTAGACATGGGAAGGAAATGCTGAGCAGGACCTAAATTTGCTCTAGAGTGACTTGAAAA
AGTCCACCTAAATTTACCTTTTTGACAGGATGAGGGGAAGATCAACCTTGATTAAAAATT
TGGATATAATTAGTCTGTCATTAGAAAATTAAGAGGGTGGACTAGAGGTGAAAAAAATAG
ACCTAAGAATATGCACATACACACAGTAAAAGAAATGCCTAAACATTATGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGAATGGATCTTTATTATTAGCCATGTGGTTAACCAGCTTCTCTGAATTTCAAGTGCTT
GTTTTTTAAAGAATAAGATAACATCTATTAATGTAGGTGTTATTAGGGTTAAGTTAGATT
ATGCATAAACTTTTATAAAGTGGAAGTTACATTTAATTAAAAGTTTTTGAACTTTACTCT
GAAAAGGTACAGAATTTATCTTTTTCCTTATGGGATTTTTTTAAAAAAGAAGTACTAAAA
TGTAGACATGGGAAGGAAATGCTGAGCAGGACCTAAATTTGCTCTAGAGTGACTTGAAAA
AGTCCACCTAAATTTACCTTTTTGACAGGATGAGGGGAAGATCAACCTTGATTAAAAATT
TGGATATAATTAGTCTGTCATTAGAAAATTAAGAGGGTGGACTAGAGGTGAAAAAAATAG
ACCTAAGAATATGCACATACACACAGTAAAAGAAATGCCTAAACATTATGAT

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               5-302, gnl|bosTau2|chr5 (27590017-27590314)
               


               
               303-471, gnl|bosTau2|chr5 (27590519-27590691)
               

               
               303-471, gnl|canFam2|chr27 (14763210-14763062)
               

               
               303-471, gnl|hg17|chr12 (40827275-40827425)
               

               
               303-471, gnl|Hg17|chr12 (40827468-40827301)
               

               
               303-471, gnl|loxAfr1|scaffold_15170 (1803-1939)
               

               
               303-471, gnl|mm7|chr15 (93358503-93358641)
               

               
               303-471, gnl|panTro1|chr10 (41421759-41421909)
               

               
               303-471, gnl|rheMac2|chr11 (39068979-39069123)
               

               
               303-471, gnl|rn3|chr7 (131840588-131840727)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-302, gnl|bosTau2|chr5 (27590017-27590314)
               


               
               303-471, gnl|bosTau2|chr5 (27590519-27590691)
               

               
               303-471, gnl|canFam2|chr27 (14763210-14763062)
               

               
               303-471, gnl|hg17|chr12 (40827275-40827425)
               

               
               303-471, gnl|Hg17|chr12 (40827468-40827301)
               

               
               303-471, gnl|loxAfr1|scaffold_15170 (1803-1939)
               

               
               303-471, gnl|mm7|chr15 (93358503-93358641)
               

               
               303-471, gnl|panTro1|chr10 (41421759-41421909)
               

               
               303-471, gnl|rheMac2|chr11 (39068979-39069123)
               

               
               303-471, gnl|rn3|chr7 (131840588-131840727)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	5-302, gnl\|bosTau2\|chr5 (27590017-27590314)

	303-471, gnl\|bosTau2\|chr5 (27590519-27590691)
	303-471, gnl\|canFam2\|chr27 (14763210-14763062)
	303-471, gnl\|hg17\|chr12 (40827275-40827425)
	303-471, gnl\|Hg17\|chr12 (40827468-40827301)
	303-471, gnl\|loxAfr1\|scaffold_15170 (1803-1939)
	303-471, gnl\|mm7\|chr15 (93358503-93358641)
	303-471, gnl\|panTro1\|chr10 (41421759-41421909)
	303-471, gnl\|rheMac2\|chr11 (39068979-39069123)
	303-471, gnl\|rn3\|chr7 (131840588-131840727)