Non-Coding RNA Search

rece11c_b22.y1

Sequence:


               
               GCTCATGATGGCTGAGAAGAGCGGAGCCCCGATGGCCGCAGCTTCTACCCAGCCTCGCGT
GGCTAACCCACCCCGGCTGCTGCAGGTCATTGCCATGTCCAAGGCGCCAGGTGGGCCTGG
CCCCAAGGTGGCTGAGACTGCCTCATCCTCCAGTGCTAGCTCCGACTCTTCCCAGTACAG
GTCACCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCATGATGGCTGAGAAGAGCGGAGCCCCGATGGCCGCAGCTTCTACCCAGCCTCGCGT
GGCTAACCCACCCCGGCTGCTGCAGGTCATTGCCATGTCCAAGGCGCCAGGTGGGCCTGG
CCCCAAGGTGGCTGAGACTGCCTCATCCTCCAGTGCTAGCTCCGACTCTTCCCAGTACAG
GTCACCTT

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-186, gnl|bosTau2|chr7 (10605684-10605869)
               

               
               1-186, gnl|canFam2|chr20 (60947763-60947508)
               

               
               1-186, gnl|danRer3|chrUn (60010204-60009955)
               

               
               1-186, gnl|dasNov1|scaffold_98814 (1034-794)
               

               
               1-186, gnl|echTel1|scaffold_161233 (2546-2297)
               

               
               1-186, gnl|fr1|chrUn (240127745-240127520)
               

               
               1-186, gnl|galGal2|chr8 (12587646-12587893)
               

               
               1-186, gnl|hg17|chr19 (763911-764145)
               

               
               1-186, gnl|Hg17|chr19 (764170-764012)
               

               
               1-186, gnl|loxAfr1|scaffold_24042 (4591-4341)
               

               
               1-186, gnl|mm7|chr10 (79645196-79645442)
               

               
               1-186, gnl|Mm7|chr10 (79645473-79645297)
               

               
               1-186, gnl|monDom2|scaffold_155 (861047-860786)
               

               
               1-186, gnl|oryCun1|scaffold_195984 (58784-58523)
               

               
               1-186, gnl|rheMac2|chr19 (548730-548964)
               

               
               1-186, gnl|rn3|chr7 (11354920-11354672)
               

               
               1-186, gnl|tetNig1|chr10 (9182078-9181787)
               

               
               1-186, gnl|xenTro1|scaffold_342 (1248273-1248012)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-186, gnl|bosTau2|chr7 (10605684-10605869)
               

               
               1-186, gnl|canFam2|chr20 (60947763-60947508)
               

               
               1-186, gnl|danRer3|chrUn (60010204-60009955)
               

               
               1-186, gnl|dasNov1|scaffold_98814 (1034-794)
               

               
               1-186, gnl|echTel1|scaffold_161233 (2546-2297)
               

               
               1-186, gnl|fr1|chrUn (240127745-240127520)
               

               
               1-186, gnl|galGal2|chr8 (12587646-12587893)
               

               
               1-186, gnl|hg17|chr19 (763911-764145)
               

               
               1-186, gnl|Hg17|chr19 (764170-764012)
               

               
               1-186, gnl|loxAfr1|scaffold_24042 (4591-4341)
               

               
               1-186, gnl|mm7|chr10 (79645196-79645442)
               

               
               1-186, gnl|Mm7|chr10 (79645473-79645297)
               

               
               1-186, gnl|monDom2|scaffold_155 (861047-860786)
               

               
               1-186, gnl|oryCun1|scaffold_195984 (58784-58523)
               

               
               1-186, gnl|rheMac2|chr19 (548730-548964)
               

               
               1-186, gnl|rn3|chr7 (11354920-11354672)
               

               
               1-186, gnl|tetNig1|chr10 (9182078-9181787)
               

               
               1-186, gnl|xenTro1|scaffold_342 (1248273-1248012)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ece (0.229305)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	1-186, gnl\|bosTau2\|chr7 (10605684-10605869)
	1-186, gnl\|canFam2\|chr20 (60947763-60947508)
	1-186, gnl\|danRer3\|chrUn (60010204-60009955)
	1-186, gnl\|dasNov1\|scaffold_98814 (1034-794)
	1-186, gnl\|echTel1\|scaffold_161233 (2546-2297)
	1-186, gnl\|fr1\|chrUn (240127745-240127520)
	1-186, gnl\|galGal2\|chr8 (12587646-12587893)
	1-186, gnl\|hg17\|chr19 (763911-764145)
	1-186, gnl\|Hg17\|chr19 (764170-764012)
	1-186, gnl\|loxAfr1\|scaffold_24042 (4591-4341)
	1-186, gnl\|mm7\|chr10 (79645196-79645442)
	1-186, gnl\|Mm7\|chr10 (79645473-79645297)
	1-186, gnl\|monDom2\|scaffold_155 (861047-860786)
	1-186, gnl\|oryCun1\|scaffold_195984 (58784-58523)
	1-186, gnl\|rheMac2\|chr19 (548730-548964)
	1-186, gnl\|rn3\|chr7 (11354920-11354672)
	1-186, gnl\|tetNig1\|chr10 (9182078-9181787)
	1-186, gnl\|xenTro1\|scaffold_342 (1248273-1248012)