Non-Coding RNA Search

rece14c_p7.y1

Sequence:


               
               AGATCTGTGTGCACGCACGGGGAGCAGGAGGGAATGGAAAGAAAGCAGGTTGGAGCTGCT
GATCGCTCTTAGCGCTCCCTCCAGATAGTACTAGAGCCAATCCAGAAAGGCTCAAAGTGG
GAAGAAGGAGAAGAGAGGACGATGGGGGGAGGGGAGCAGTGAGGGAAAGAGAGTGAAACT
GAGCAAGCACATAAGTGAGAAAAACAGACTCAGAACTTCAAAGCTGCAGAGACAAGCAGA
ATGTCAGCAGCTTGTAATTAGTGGTTCATGGTTGCGTCAGTAACTGTATCTCTCCAAGAA
TAACTATGTGATGTGTGCCACAAAGTGCAGAAGACAGTCATAACCGAGTTATCAAACCCG
GTTCAAACAAGGGCAAATGAATTAGGGAATCTTCTATGTTTGTAAATCAAATACTGATGG
ATTACACATTTGAGATTTGCTGAATTCTGCATAATTGAAGGCTGAATTATTTATTCATTG
GGGAGGTGGGGATACTGTGTATTCATTAAATGAAACTGTGGACCCTTAAAAAAAAAAAAA
AAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATCTGTGTGCACGCACGGGGAGCAGGAGGGAATGGAAAGAAAGCAGGTTGGAGCTGCT
GATCGCTCTTAGCGCTCCCTCCAGATAGTACTAGAGCCAATCCAGAAAGGCTCAAAGTGG
GAAGAAGGAGAAGAGAGGACGATGGGGGGAGGGGAGCAGTGAGGGAAAGAGAGTGAAACT
GAGCAAGCACATAAGTGAGAAAAACAGACTCAGAACTTCAAAGCTGCAGAGACAAGCAGA
ATGTCAGCAGCTTGTAATTAGTGGTTCATGGTTGCGTCAGTAACTGTATCTCTCCAAGAA
TAACTATGTGATGTGTGCCACAAAGTGCAGAAGACAGTCATAACCGAGTTATCAAACCCG
GTTCAAACAAGGGCAAATGAATTAGGGAATCTTCTATGTTTGTAAATCAAATACTGATGG
ATTACACATTTGAGATTTGCTGAATTCTGCATAATTGAAGGCTGAATTATTTATTCATTG
GGGAGGTGGGGATACTGTGTATTCATTAAATGAAACTGTGGACCCTTAAAAAAAAAAAAA
AAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               170-276, - strand, RNAz p=0.654835

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               170-276, - strand, RNAz p=0.654835

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-532, gnl|bosTau2|chr23 (28475661-28475127)
               

               
               1-532, gnl|canFam2|chr35 (23576366-23577258)
               

               
               1-532, gnl|dasNov1|scaffold_18991 (37124-37981)
               

               
               1-532, gnl|echTel1|scaffold_230853 (4172-4964)
               

               
               1-532, gnl|galGal2|chr2 (58430966-58430079)
               

               
               1-532, gnl|hg17|chr6 (22256007-22256883)
               

               
               1-532, gnl|Hg17|chr6 (22256531-22257048)
               

               
               1-532, gnl|loxAfr1|scaffold_24867 (31910-32781)
               

               
               1-532, gnl|mm7|chr13 (27784050-27783187)
               

               
               1-532, gnl|Mm7|chr13 (27783549-27783025)
               

               
               1-532, gnl|monDom2|scaffold_3 (111895115-111896081)
               

               
               1-532, gnl|oryCun1|scaffold_208917 (49501-50375)
               

               
               1-532, gnl|panTro1|chr5 (22669113-22669992)
               

               
               1-532, gnl|rheMac2|chr4 (22129605-22130483)
               

               
               1-532, gnl|rn3|chr17 (42738214-42739075)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-532, gnl|bosTau2|chr23 (28475661-28475127)
               

               
               1-532, gnl|canFam2|chr35 (23576366-23577258)
               

               
               1-532, gnl|dasNov1|scaffold_18991 (37124-37981)
               

               
               1-532, gnl|echTel1|scaffold_230853 (4172-4964)
               

               
               1-532, gnl|galGal2|chr2 (58430966-58430079)
               

               
               1-532, gnl|hg17|chr6 (22256007-22256883)
               

               
               1-532, gnl|Hg17|chr6 (22256531-22257048)
               

               
               1-532, gnl|loxAfr1|scaffold_24867 (31910-32781)
               

               
               1-532, gnl|mm7|chr13 (27784050-27783187)
               

               
               1-532, gnl|Mm7|chr13 (27783549-27783025)
               

               
               1-532, gnl|monDom2|scaffold_3 (111895115-111896081)
               

               
               1-532, gnl|oryCun1|scaffold_208917 (49501-50375)
               

               
               1-532, gnl|panTro1|chr5 (22669113-22669992)
               

               
               1-532, gnl|rheMac2|chr4 (22129605-22130483)
               

               
               1-532, gnl|rn3|chr17 (42738214-42739075)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	1-532, gnl\|bosTau2\|chr23 (28475661-28475127)
	1-532, gnl\|canFam2\|chr35 (23576366-23577258)
	1-532, gnl\|dasNov1\|scaffold_18991 (37124-37981)
	1-532, gnl\|echTel1\|scaffold_230853 (4172-4964)
	1-532, gnl\|galGal2\|chr2 (58430966-58430079)
	1-532, gnl\|hg17\|chr6 (22256007-22256883)
	1-532, gnl\|Hg17\|chr6 (22256531-22257048)
	1-532, gnl\|loxAfr1\|scaffold_24867 (31910-32781)
	1-532, gnl\|mm7\|chr13 (27784050-27783187)
	1-532, gnl\|Mm7\|chr13 (27783549-27783025)
	1-532, gnl\|monDom2\|scaffold_3 (111895115-111896081)
	1-532, gnl\|oryCun1\|scaffold_208917 (49501-50375)
	1-532, gnl\|panTro1\|chr5 (22669113-22669992)
	1-532, gnl\|rheMac2\|chr4 (22129605-22130483)
	1-532, gnl\|rn3\|chr17 (42738214-42739075)