Non-Coding RNA Search

rece15c_l14.y1

Sequence:


               
               CACCAGCTCCCTGACGCTCACTTTCTGGTACACGCTGCAGGATGACATTCTGTCCTTCGA
GGCGGAGAAGCAGGCTGTGTACCAGCAGGTGTACCGGCCGGTCTACTTCCAGCTGGTGGA
TGTGCTTCTGCACAAGGCCCAGTTCCCTTCTGATGAAGAGTACGGGTTCTGGTCCTCAGA
TGAGAAGGAGCAGTTCCGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCAGCTCCCTGACGCTCACTTTCTGGTACACGCTGCAGGATGACATTCTGTCCTTCGA
GGCGGAGAAGCAGGCTGTGTACCAGCAGGTGTACCGGCCGGTCTACTTCCAGCTGGTGGA
TGTGCTTCTGCACAAGGCCCAGTTCCCTTCTGATGAAGAGTACGGGTTCTGGTCCTCAGA
TGAGAAGGAGCAGTTCCGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               77-198, + strand, RNAz p=0.971076

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-198, + strand, RNAz p=0.971076

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               38-198, gnl|bosTau2|chr3 (71001497-71001337)
               

               
               38-198, gnl|canFam2|chr15 (19309344-19309168)
               

               
               38-198, gnl|danRer3|chrNA (26976788-26976613)
               

               
               38-198, gnl|dasNov1|scaffold_79470 (3324-3500)
               

               
               38-198, gnl|echTel1|scaffold_182373 (675-500)
               

               
               38-198, gnl|fr1|chrUn (71481045-71480865)
               

               
               38-198, gnl|galGal2|chr8 (20640905-20641092)
               

               
               38-198, gnl|hg17|chr1 (44091570-44091746)
               

               
               38-198, gnl|Hg17|chr1 (44091572-44091732)
               

               
               38-198, gnl|mm7|chr4 (117281517-117281341)
               

               
               38-198, gnl|Mm7|chr4 (117281513-117281353)
               

               
               38-198, gnl|monDom2|scaffold_70 (8879733-8879558)
               

               
               38-198, gnl|oryCun1|scaffold_213522 (94350-94174)
               

               
               38-198, gnl|panTro1|chr1 (45088396-45088572)
               

               
               38-198, gnl|rheMac2|chr1 (46880768-46880944)
               

               
               38-198, gnl|rn3|chr5 (138375620-138375444)
               

               
               38-198, gnl|tetNig1|chr1_random (2958632-2958805)
               

               
               38-198, gnl|xenTro1|scaffold_1 (6976033-6976209)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-198, gnl|bosTau2|chr3 (71001497-71001337)
               

               
               38-198, gnl|canFam2|chr15 (19309344-19309168)
               

               
               38-198, gnl|danRer3|chrNA (26976788-26976613)
               

               
               38-198, gnl|dasNov1|scaffold_79470 (3324-3500)
               

               
               38-198, gnl|echTel1|scaffold_182373 (675-500)
               

               
               38-198, gnl|fr1|chrUn (71481045-71480865)
               

               
               38-198, gnl|galGal2|chr8 (20640905-20641092)
               

               
               38-198, gnl|hg17|chr1 (44091570-44091746)
               

               
               38-198, gnl|Hg17|chr1 (44091572-44091732)
               

               
               38-198, gnl|mm7|chr4 (117281517-117281341)
               

               
               38-198, gnl|Mm7|chr4 (117281513-117281353)
               

               
               38-198, gnl|monDom2|scaffold_70 (8879733-8879558)
               

               
               38-198, gnl|oryCun1|scaffold_213522 (94350-94174)
               

               
               38-198, gnl|panTro1|chr1 (45088396-45088572)
               

               
               38-198, gnl|rheMac2|chr1 (46880768-46880944)
               

               
               38-198, gnl|rn3|chr5 (138375620-138375444)
               

               
               38-198, gnl|tetNig1|chr1_random (2958632-2958805)
               

               
               38-198, gnl|xenTro1|scaffold_1 (6976033-6976209)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	38-198, gnl\|bosTau2\|chr3 (71001497-71001337)
	38-198, gnl\|canFam2\|chr15 (19309344-19309168)
	38-198, gnl\|danRer3\|chrNA (26976788-26976613)
	38-198, gnl\|dasNov1\|scaffold_79470 (3324-3500)
	38-198, gnl\|echTel1\|scaffold_182373 (675-500)
	38-198, gnl\|fr1\|chrUn (71481045-71480865)
	38-198, gnl\|galGal2\|chr8 (20640905-20641092)
	38-198, gnl\|hg17\|chr1 (44091570-44091746)
	38-198, gnl\|Hg17\|chr1 (44091572-44091732)
	38-198, gnl\|mm7\|chr4 (117281517-117281341)
	38-198, gnl\|Mm7\|chr4 (117281513-117281353)
	38-198, gnl\|monDom2\|scaffold_70 (8879733-8879558)
	38-198, gnl\|oryCun1\|scaffold_213522 (94350-94174)
	38-198, gnl\|panTro1\|chr1 (45088396-45088572)
	38-198, gnl\|rheMac2\|chr1 (46880768-46880944)
	38-198, gnl\|rn3\|chr5 (138375620-138375444)
	38-198, gnl\|tetNig1\|chr1_random (2958632-2958805)
	38-198, gnl\|xenTro1\|scaffold_1 (6976033-6976209)