Non-Coding RNA Search

rece16c_j11.y1

Sequence:


               
               CTCATTTCTGTTTCTTCTATTGTAGCATGATGTTATAGGAGAAAAAGTATGGACTGTGAA
GTCAGAAGAGTTGAATTTCAGCTCTCTGTCATGTCCTAGTAgtgtgaacttgggcaagtc
ataagccctctgagtctcaagtttttcacctgtaaaatggggatggtgatacctaacatt
taaagttggcttgaggattaaatgacagaacgtatgtaaaacacttagcaAGTGCATAGC
TCATAAAGGGTCCTTGACAAATATTGGTTCTTTTCTCTCCTATAATAAGCATATGGAACT
CAAATGTATTTGGGATAAAGGTATTAGTGATATTGTTTAAATATGAGATGGAGCATAGAG
CTGATACCTATGGAGCAGCTGTTCCAGACCACACACTGCTAGAATAACTTTTCTAGCTGA
CTTTTCATGGTGACTTAAGAAGGATGTGCAGCTCAGTTTCATCTAGCCCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATTTCTGTTTCTTCTATTGTAGCATGATGTTATAGGAGAAAAAGTATGGACTGTGAA
GTCAGAAGAGTTGAATTTCAGCTCTCTGTCATGTCCTAGTAgtgtgaacttgggcaagtc
ataagccctctgagtctcaagtttttcacctgtaaaatggggatggtgatacctaacatt
taaagttggcttgaggattaaatgacagaacgtatgtaaaacacttagcaAGTGCATAGC
TCATAAAGGGTCCTTGACAAATATTGGTTCTTTTCTCTCCTATAATAAGCATATGGAACT
CAAATGTATTTGGGATAAAGGTATTAGTGATATTGTTTAAATATGAGATGGAGCATAGAG
CTGATACCTATGGAGCAGCTGTTCCAGACCACACACTGCTAGAATAACTTTTCTAGCTGA
CTTTTCATGGTGACTTAAGAAGGATGTGCAGCTCAGTTTCATCTAGCCCCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-105, + strand, RNAz p=0.999994

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-105, + strand, RNAz p=0.999994

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-472, gnl|bosTau2|chr8 (48648251-48647786)
               

               
               1-472, gnl|Hg17|chr9 (101316878-101316399)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-472, gnl|bosTau2|chr8 (48648251-48647786)
               

               
               1-472, gnl|Hg17|chr9 (101316878-101316399)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	1-472, gnl\|bosTau2\|chr8 (48648251-48647786)
	1-472, gnl\|Hg17\|chr9 (101316878-101316399)