Non-Coding RNA Search

rece18c_b5.y1

Sequence:


               
               CAGCGCCCCACCTTCCCGGTAAACTCAAGCCTGGACCTGCCAGTTTCATCCACCCACTTC
CAGGCCAGAGTCGGAGGAACCAGCCACTTCACTGGGTCAGGGGCCCAGAGGACCGAGGTA
TGGCTTCTCTGATTTCCATTCCCGAATCACTGCCTGGACCACTTTCTCATCTCCCTGCAG
AGAGAGGAACCCAGTCACACTACTGATTCAGACTACTGCTACTATTCAGCTCCCAAGGAT
GCTGGCCCCTGCCTCCTGGAGCTTCTTCACCCTCACCTGGAGCAGGTCTGCCAGCTGTAG
TTGTAGCACCCTGGTCTCCTCTCGGAGCTGGTTGATGGTCTCCTGATTCTTCCTGATGTT
CCACTGGGTGCTCTCATAAAAGGCCTTCCGGTCACCCTCTGGGGTCAGGTGAGGTGGGCA
GGCACAAGCAGAGCATCATAGAGGGGAGGGACAATTTTCGTAATTGTCAACATTGTAACA
ATATTTTACTTTGGGCATACGTTATGTATTGGATGCTGGACTAATAAATTTCCTATTCAT
CAAATACCCTGTACCAATAGGTATATATCTATATATATGTGTGTGTACATACCATACCCA
TTTTAGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGCCCCACCTTCCCGGTAAACTCAAGCCTGGACCTGCCAGTTTCATCCACCCACTTC
CAGGCCAGAGTCGGAGGAACCAGCCACTTCACTGGGTCAGGGGCCCAGAGGACCGAGGTA
TGGCTTCTCTGATTTCCATTCCCGAATCACTGCCTGGACCACTTTCTCATCTCCCTGCAG
AGAGAGGAACCCAGTCACACTACTGATTCAGACTACTGCTACTATTCAGCTCCCAAGGAT
GCTGGCCCCTGCCTCCTGGAGCTTCTTCACCCTCACCTGGAGCAGGTCTGCCAGCTGTAG
TTGTAGCACCCTGGTCTCCTCTCGGAGCTGGTTGATGGTCTCCTGATTCTTCCTGATGTT
CCACTGGGTGCTCTCATAAAAGGCCTTCCGGTCACCCTCTGGGGTCAGGTGAGGTGGGCA
GGCACAAGCAGAGCATCATAGAGGGGAGGGACAATTTTCGTAATTGTCAACATTGTAACA
ATATTTTACTTTGGGCATACGTTATGTATTGGATGCTGGACTAATAAATTTCCTATTCAT
CAAATACCCTGTACCAATAGGTATATATCTATATATATGTGTGTGTACATACCATACCCA
TTTTAGAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               217-332, - strand, RNAz p=0.770484

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               217-332, - strand, RNAz p=0.770484

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_145045, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_145045, -

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               116-522, gnl|bosTau2|chr7 (11263889-11264314)
               

               
               116-522, gnl|Hg17|chr19 (11402538-11402917)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-522, gnl|bosTau2|chr7 (11263889-11264314)
               

               
               116-522, gnl|Hg17|chr19 (11402538-11402917)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	116-522, gnl\|bosTau2\|chr7 (11263889-11264314)
	116-522, gnl\|Hg17\|chr19 (11402538-11402917)