Non-Coding RNA Search

rece18c_k11.y1

Sequence:


               
               GTTCGCTGGTCCAAGGGGATTTATCACTAATAAATTCAGAGAAAGATTACTGAGGAAAAA
AAAGTTTTAATAATGTAAGATCCTAGTAAAAGGAATATACAAACATTGCCCCAGCAATCT
AATCTGGAATTGTTACAAATGGAAACGACACTAAAGGACGATATTTGGGAGCATCTCTTT
TTGTCAAGAGTTAGAATTGGCACTAAAGTACTAATACTGTAACTTTCTTGATAAAATAAC
TTTATTTTTCCGTAGTGGAATGCTGCAACTTTTTTACACTTAACAGTTGCTTTTAAATTA
CAGTATTCGATGTAAAAGTTGTATTAACTACAGCTTCTTTTGCAAAAAAGTCTCAAAAGG
GCATTATTTGTTGATGCATTTTTCTCTGAGCATGGTTTCATAGAGAACTGAGTTATATCC
AGACGTTTCTATGTTGAAAGTTTGGCTTATGTAATAAAAACAAAAACAAAAGTACCTGAA
TTGTATAGTGTCTGTACATCAAAGAACTTTTAAACAGTGGCCTTACAGTAGCAGTTTTTC
TACAAGATTTTTCTTTTTCTGATGACATTTGGGCTTACAACTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCGCTGGTCCAAGGGGATTTATCACTAATAAATTCAGAGAAAGATTACTGAGGAAAAA
AAAGTTTTAATAATGTAAGATCCTAGTAAAAGGAATATACAAACATTGCCCCAGCAATCT
AATCTGGAATTGTTACAAATGGAAACGACACTAAAGGACGATATTTGGGAGCATCTCTTT
TTGTCAAGAGTTAGAATTGGCACTAAAGTACTAATACTGTAACTTTCTTGATAAAATAAC
TTTATTTTTCCGTAGTGGAATGCTGCAACTTTTTTACACTTAACAGTTGCTTTTAAATTA
CAGTATTCGATGTAAAAGTTGTATTAACTACAGCTTCTTTTGCAAAAAAGTCTCAAAAGG
GCATTATTTGTTGATGCATTTTTCTCTGAGCATGGTTTCATAGAGAACTGAGTTATATCC
AGACGTTTCTATGTTGAAAGTTTGGCTTATGTAATAAAAACAAAAACAAAAGTACCTGAA
TTGTATAGTGTCTGTACATCAAAGAACTTTTAAACAGTGGCCTTACAGTAGCAGTTTTTC
TACAAGATTTTTCTTTTTCTGATGACATTTGGGCTTACAACTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               203-321, - strand, RNAz p=0.660534

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               203-321, - strand, RNAz p=0.660534

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               88-583, gnl|bosTau2|chrX (39333963-39334443)
               

               
               88-583, gnl|Hg17|chrX (19695114-19694602)
               

               
               88-583, gnl|Mm7|chrX (154366428-154366898)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-583, gnl|bosTau2|chrX (39333963-39334443)
               

               
               88-583, gnl|Hg17|chrX (19695114-19694602)
               

               
               88-583, gnl|Mm7|chrX (154366428-154366898)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	88-583, gnl\|bosTau2\|chrX (39333963-39334443)
	88-583, gnl\|Hg17\|chrX (19695114-19694602)
	88-583, gnl\|Mm7\|chrX (154366428-154366898)