Non-Coding RNA Search

rece18c_p17.y1

Sequence:


               
               CACTTTGCCTCAGTTGAGCATCTAGGAAGTATTAAAACTGTGAAGCCTTCTCAGTGCACT
TTGAACCTGGAAAATAATCGACACAGGCCCATGGGACCATGACTCAGGGAGGTGGGACAC
AGTCACCTCCATCCAGGAATCACAACGTCTAAGGAACAAAACCCAACTCAGAATAATAAA
TTAAATGCCGTACTCCCCCCCTCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTTTGCCTCAGTTGAGCATCTAGGAAGTATTAAAACTGTGAAGCCTTCTCAGTGCACT
TTGAACCTGGAAAATAATCGACACAGGCCCATGGGACCATGACTCAGGGAGGTGGGACAC
AGTCACCTCCATCCAGGAATCACAACGTCTAAGGAACAAAACCCAACTCAGAATAATAAA
TTAAATGCCGTACTCCCCCCCTCAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               19-201, - strand, RNAz p=0.995397
               

               
               50-201, - strand, RNAz p=0.750992
               

               
               80-201, - strand, RNAz p=0.883344

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               19-201, - strand, RNAz p=0.995397
               

               
               50-201, - strand, RNAz p=0.750992
               

               
               80-201, - strand, RNAz p=0.883344

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               19-194, DB566602 RIKEN full-length enriched human cDNA library, 
(dbj|DB566602.1|), blast E-value=4e-39, identity=87.57% 
               

               
               19-194, DB568503 RIKEN full-length enriched human cDNA library, 
(dbj|DB568503.1|), blast E-value=4e-39, identity=87.57% 
               

               
               19-194, CR452106 Normalized and Subtracted bovine embryonic and 
(emb|CR452106.2|), blast E-value=0, identity=90.45% 
               

               
               19-194, CR742182 NCI_CGAP_GCB1 Homo sapiens cDNA clone IMAGp998K172041 ; 
(emb|CR742182.1|), blast E-value=1e-39, identity=87.57% 
               

               
               19-194, 114600 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW670529.1|), 
blast E-value=0, identity=90.45% 
               

               
               19-194, 1465970 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT889119.1|), 
blast E-value=0, identity=90.45%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               19-194, DB566602 RIKEN full-length enriched human cDNA library, 
(dbj|DB566602.1|), blast E-value=4e-39, identity=87.57% 
               

               
               19-194, DB568503 RIKEN full-length enriched human cDNA library, 
(dbj|DB568503.1|), blast E-value=4e-39, identity=87.57% 
               

               
               19-194, CR452106 Normalized and Subtracted bovine embryonic and 
(emb|CR452106.2|), blast E-value=0, identity=90.45% 
               

               
               19-194, CR742182 NCI_CGAP_GCB1 Homo sapiens cDNA clone IMAGp998K172041 ; 
(emb|CR742182.1|), blast E-value=1e-39, identity=87.57% 
               

               
               19-194, 114600 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW670529.1|), 
blast E-value=0, identity=90.45% 
               

               
               19-194, 1465970 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT889119.1|), 
blast E-value=0, identity=90.45%

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-201, gnl|bosTau2|chr25 (29858894-29859095)
               

               
               1-201, gnl|canFam2|chr6 (9264931-9264608)
               

               
               1-201, gnl|canFam2|chr6 (9264920-9264611)
               

               
               1-201, gnl|dasNov1|scaffold_233778 (1747-1447)
               

               
               1-201, gnl|dasNov1|scaffold_233778 (1737-1450)
               

               
               1-201, gnl|galGal2|chr19 (607399-607620)
               

               
               1-201, gnl|hg17|chr18 (665751-666074)
               

               
               1-201, gnl|hg17|chr7 (72981200-72981507)
               

               
               1-201, gnl|Hg17|chr7 (72981303-72981504)
               

               
               1-201, gnl|loxAfr1|scaffold_34544 (5039-4720)
               

               
               1-201, gnl|loxAfr1|scaffold_34544 (5028-4722)
               

               
               1-201, gnl|mm7|chr14 (24353943-24354253)
               

               
               1-201, gnl|mm7|chr5 (133627654-133627329)
               

               
               1-201, gnl|Mm7|chr5 (133627526-133627330)
               

               
               1-201, gnl|monDom2|scaffold_77 (6767677-6767970)
               

               
               1-201, gnl|panTro1|chr17 (12138676-12138352)
               

               
               1-201, gnl|panTro1|chr6_random (54274694-54274387)
               

               
               1-201, gnl|rheMac2|chr18 (13428596-13428281)
               

               
               1-201, gnl|rheMac2|chr18 (13428585-13428299)
               

               
               1-201, gnl|rn3|chr12 (22985518-22985840)
               

               
               1-201, gnl|rn3|chr12 (22985529-22985841)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-201, gnl|bosTau2|chr25 (29858894-29859095)
               

               
               1-201, gnl|canFam2|chr6 (9264931-9264608)
               

               
               1-201, gnl|canFam2|chr6 (9264920-9264611)
               

               
               1-201, gnl|dasNov1|scaffold_233778 (1747-1447)
               

               
               1-201, gnl|dasNov1|scaffold_233778 (1737-1450)
               

               
               1-201, gnl|galGal2|chr19 (607399-607620)
               

               
               1-201, gnl|hg17|chr18 (665751-666074)
               

               
               1-201, gnl|hg17|chr7 (72981200-72981507)
               

               
               1-201, gnl|Hg17|chr7 (72981303-72981504)
               

               
               1-201, gnl|loxAfr1|scaffold_34544 (5039-4720)
               

               
               1-201, gnl|loxAfr1|scaffold_34544 (5028-4722)
               

               
               1-201, gnl|mm7|chr14 (24353943-24354253)
               

               
               1-201, gnl|mm7|chr5 (133627654-133627329)
               

               
               1-201, gnl|Mm7|chr5 (133627526-133627330)
               

               
               1-201, gnl|monDom2|scaffold_77 (6767677-6767970)
               

               
               1-201, gnl|panTro1|chr17 (12138676-12138352)
               

               
               1-201, gnl|panTro1|chr6_random (54274694-54274387)
               

               
               1-201, gnl|rheMac2|chr18 (13428596-13428281)
               

               
               1-201, gnl|rheMac2|chr18 (13428585-13428299)
               

               
               1-201, gnl|rn3|chr12 (22985518-22985840)
               

               
               1-201, gnl|rn3|chr12 (22985529-22985841)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ece (0.229305)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	19-201, - strand, RNAz p=0.995397
	50-201, - strand, RNAz p=0.750992
	80-201, - strand, RNAz p=0.883344

	19-194, DB566602 RIKEN full-length enriched human cDNA library, (dbj\|DB566602.1\|), blast E-value=4e-39, identity=87.57%
	19-194, DB568503 RIKEN full-length enriched human cDNA library, (dbj\|DB568503.1\|), blast E-value=4e-39, identity=87.57%
	19-194, CR452106 Normalized and Subtracted bovine embryonic and (emb\|CR452106.2\|), blast E-value=0, identity=90.45%
	19-194, CR742182 NCI_CGAP_GCB1 Homo sapiens cDNA clone IMAGp998K172041 ; (emb\|CR742182.1\|), blast E-value=1e-39, identity=87.57%
	19-194, 114600 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb\|AW670529.1\|), blast E-value=0, identity=90.45%
	19-194, 1465970 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DT889119.1\|), blast E-value=0, identity=90.45%

	1-201, gnl\|bosTau2\|chr25 (29858894-29859095)
	1-201, gnl\|canFam2\|chr6 (9264931-9264608)
	1-201, gnl\|canFam2\|chr6 (9264920-9264611)
	1-201, gnl\|dasNov1\|scaffold_233778 (1747-1447)
	1-201, gnl\|dasNov1\|scaffold_233778 (1737-1450)
	1-201, gnl\|galGal2\|chr19 (607399-607620)
	1-201, gnl\|hg17\|chr18 (665751-666074)
	1-201, gnl\|hg17\|chr7 (72981200-72981507)
	1-201, gnl\|Hg17\|chr7 (72981303-72981504)
	1-201, gnl\|loxAfr1\|scaffold_34544 (5039-4720)
	1-201, gnl\|loxAfr1\|scaffold_34544 (5028-4722)
	1-201, gnl\|mm7\|chr14 (24353943-24354253)
	1-201, gnl\|mm7\|chr5 (133627654-133627329)
	1-201, gnl\|Mm7\|chr5 (133627526-133627330)
	1-201, gnl\|monDom2\|scaffold_77 (6767677-6767970)
	1-201, gnl\|panTro1\|chr17 (12138676-12138352)
	1-201, gnl\|panTro1\|chr6_random (54274694-54274387)
	1-201, gnl\|rheMac2\|chr18 (13428596-13428281)
	1-201, gnl\|rheMac2\|chr18 (13428585-13428299)
	1-201, gnl\|rn3\|chr12 (22985518-22985840)
	1-201, gnl\|rn3\|chr12 (22985529-22985841)