Non-Coding RNA Search

rece20c_i10.y1

Sequence:


               
               CTCTTAACCAGGATGACAGTGGAGTTAGTGAGGCTGTGATGCTTTACTTGGCAGCAGCCT
CCAGAAACGAGCATTTCAGGGAAAAGGCCTTGCTCTATTACTGTGAAGTGCTAACAAAGA
CTGACCTCCAGCTCCAGAAGGCAGCTTGCCTGGCACTGAAAAGCCTGAAGGCTACTGAAA
GCATTAAAATGCTGGTGACACTGTGTCAGTCGGATACTGAAGAAATCAGAAATGTGGCCT
CAGAAACTCTCTTATCTCTTGGTGAGTTTTTTTTTTTTTTAACATGATTGTTTACTTCTT
ACATTCTCAAAGGGAATGGTAATGAAAAGGAAAAGGTTCACGTGCTTTGTCTTAGTGATA
TTTCCCCTATAGGTTGTCTGCTCACACTTACACACACACAGTATGAGGAAGTGATCAGTT
TCCATCTCACCCCAACTCCTCATTATAACTCCCTGGAAGTTAAGAGTGAAGCTGACTCTC
TGGAGCCTTCCTAGCTGAGTTCCTCAGTTTGGGCACTACTTGGAATCAAGAACATAGAAC
TCAAGCTATAAAGCAGAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTAACCAGGATGACAGTGGAGTTAGTGAGGCTGTGATGCTTTACTTGGCAGCAGCCT
CCAGAAACGAGCATTTCAGGGAAAAGGCCTTGCTCTATTACTGTGAAGTGCTAACAAAGA
CTGACCTCCAGCTCCAGAAGGCAGCTTGCCTGGCACTGAAAAGCCTGAAGGCTACTGAAA
GCATTAAAATGCTGGTGACACTGTGTCAGTCGGATACTGAAGAAATCAGAAATGTGGCCT
CAGAAACTCTCTTATCTCTTGGTGAGTTTTTTTTTTTTTTAACATGATTGTTTACTTCTT
ACATTCTCAAAGGGAATGGTAATGAAAAGGAAAAGGTTCACGTGCTTTGTCTTAGTGATA
TTTCCCCTATAGGTTGTCTGCTCACACTTACACACACACAGTATGAGGAAGTGATCAGTT
TCCATCTCACCCCAACTCCTCATTATAACTCCCTGGAAGTTAAGAGTGAAGCTGACTCTC
TGGAGCCTTCCTAGCTGAGTTCCTCAGTTTGGGCACTACTTGGAATCAAGAACATAGAAC
TCAAGCTATAAAGCAGAGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12840530|dbj|BAB24871.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12840530|dbj|BAB24871.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               166-277, + strand, RNAz p=0.602535

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               166-277, + strand, RNAz p=0.602535

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               166-400, gnl|bosTau2|chr23 (26636416-26636185)
               

               
               166-400, gnl|Hg17|chr6 (24918019-24917781)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-400, gnl|bosTau2|chr23 (26636416-26636185)
               

               
               166-400, gnl|Hg17|chr6 (24918019-24917781)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	166-400, gnl\|bosTau2\|chr23 (26636416-26636185)
	166-400, gnl\|Hg17\|chr6 (24918019-24917781)