Non-Coding RNA Search

rece28c_c23.y1

Sequence:


               
               GCCTTTCTCGGCACTGAACTGAACTCTTTCGGGCCTGGAGCCCCTCTGCACAGCAGAGGC
CCCTCCTCACCCCCTTCCAGCCCCGGACAGGGGCAGCAGGCTTCGGGGACCTGGACCCCC
CCATCTCGCGTCTCCCTTCGCGTCCCCCACCCGCCCGGCCCCTGGAGGGGCCTCTGGTTC
AAACCTTCGCGTGGCATTTTCACATTATTTAAAAAAGACAAAAACAACTTTTTGGAGGAA
AAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTTTCTCGGCACTGAACTGAACTCTTTCGGGCCTGGAGCCCCTCTGCACAGCAGAGGC
CCCTCCTCACCCCCTTCCAGCCCCGGACAGGGGCAGCAGGCTTCGGGGACCTGGACCCCC
CCATCTCGCGTCTCCCTTCGCGTCCCCCACCCGCCCGGCCCCTGGAGGGGCCTCTGGTTC
AAACCTTCGCGTGGCATTTTCACATTATTTAAAAAAGACAAAAACAACTTTTTGGAGGAA
AAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-205, - strand, RNAz p=0.939721
               

               
               35-225, - strand, RNAz p=0.915931

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-205, - strand, RNAz p=0.939721
               

               
               35-225, - strand, RNAz p=0.915931

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-240, gnl|bosTau2|chr18 (50337936-50338173)
               

               
               1-240, gnl|canFam2|chr1 (110676835-110676436)
               

               
               1-240, gnl|echTel1|scaffold_240452 (3325-2896)
               

               
               1-240, gnl|hg17|chr19 (53680293-53680705)
               

               
               1-240, gnl|Hg17|chr19 (53680575-53680340)
               

               
               1-240, gnl|mm7|chr7 (41980422-41980019)
               

               
               1-240, gnl|Mm7|chr7 (41980143-41980376)
               

               
               1-240, gnl|oryCun1|scaffold_202061 (42513-42928)
               

               
               1-240, gnl|panTro1|chr20 (51055154-51055564)
               

               
               1-240, gnl|rheMac2|chr19 (54785454-54785866)
               

               
               1-240, gnl|rn3|chr1 (96359258-96358871)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-240, gnl|bosTau2|chr18 (50337936-50338173)
               

               
               1-240, gnl|canFam2|chr1 (110676835-110676436)
               

               
               1-240, gnl|echTel1|scaffold_240452 (3325-2896)
               

               
               1-240, gnl|hg17|chr19 (53680293-53680705)
               

               
               1-240, gnl|Hg17|chr19 (53680575-53680340)
               

               
               1-240, gnl|mm7|chr7 (41980422-41980019)
               

               
               1-240, gnl|Mm7|chr7 (41980143-41980376)
               

               
               1-240, gnl|oryCun1|scaffold_202061 (42513-42928)
               

               
               1-240, gnl|panTro1|chr20 (51055154-51055564)
               

               
               1-240, gnl|rheMac2|chr19 (54785454-54785866)
               

               
               1-240, gnl|rn3|chr1 (96359258-96358871)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	3-205, - strand, RNAz p=0.939721
	35-225, - strand, RNAz p=0.915931

	1-240, gnl\|bosTau2\|chr18 (50337936-50338173)
	1-240, gnl\|canFam2\|chr1 (110676835-110676436)
	1-240, gnl\|echTel1\|scaffold_240452 (3325-2896)
	1-240, gnl\|hg17\|chr19 (53680293-53680705)
	1-240, gnl\|Hg17\|chr19 (53680575-53680340)
	1-240, gnl\|mm7\|chr7 (41980422-41980019)
	1-240, gnl\|Mm7\|chr7 (41980143-41980376)
	1-240, gnl\|oryCun1\|scaffold_202061 (42513-42928)
	1-240, gnl\|panTro1\|chr20 (51055154-51055564)
	1-240, gnl\|rheMac2\|chr19 (54785454-54785866)
	1-240, gnl\|rn3\|chr1 (96359258-96358871)