Non-Coding RNA Search

reep01c_a6.y1

Sequence:


               
               GAATTGCAAGATGGATAGGGCTTACAGTGCCCCCAGTCCTGCTGATACCAAATGCCTTTA
AGATACAGCCTTTCCCATCCTAATCTACAAAGGAAACAGGAAAAAGGAACTTAAAACTCC
CTGTGCTCATACAGAAATGAGACTGTGACAGCCGCTTCTGTGCTGTTCCTTCTTGCCTCT
GACTGGTAAACAAGATCTAGGAGAACATGCGGATGGAAAGTCAGAAAACTCTGCGTGTTT
GAAAGATCCTTGGGACCTCATGCACATCTGTGGAAACTGGATGGAGAGATTTGGGGAAAC
ATGGACTCTATAGTCGGCTTAGTTCTCTATGGAGTCAGCTTGCTCCTTTCTGGAACAGTG
GACTGTGCCATGGACCTGATCTTGATCAATTCCCTACCTCTTGTGTCTGATGCTGAAACA
TCTCTCACCTGCATTGCTTCTGGATGGCACCCCCATGAGCCCATAATCATAGGAAGGGAC
TTTGAAGCCTTAATGAACCAGCACCAAGATCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATTGCAAGATGGATAGGGCTTACAGTGCCCCCAGTCCTGCTGATACCAAATGCCTTTA
AGATACAGCCTTTCCCATCCTAATCTACAAAGGAAACAGGAAAAAGGAACTTAAAACTCC
CTGTGCTCATACAGAAATGAGACTGTGACAGCCGCTTCTGTGCTGTTCCTTCTTGCCTCT
GACTGGTAAACAAGATCTAGGAGAACATGCGGATGGAAAGTCAGAAAACTCTGCGTGTTT
GAAAGATCCTTGGGACCTCATGCACATCTGTGGAAACTGGATGGAGAGATTTGGGGAAAC
ATGGACTCTATAGTCGGCTTAGTTCTCTATGGAGTCAGCTTGCTCCTTTCTGGAACAGTG
GACTGTGCCATGGACCTGATCTTGATCAATTCCCTACCTCTTGTGTCTGATGCTGAAACA
TCTCTCACCTGCATTGCTTCTGGATGGCACCCCCATGAGCCCATAATCATAGGAAGGGAC
TTTGAAGCCTTAATGAACCAGCACCAAGATCCA

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-353, gnl|bosTau2|chr8 (10498473-10498119)
               

               
               1-353, gnl|canFam2|chr11 (48309261-48309538)
               

               
               1-353, gnl|dasNov1|scaffold_13667 (16854-16587)
               

               
               1-353, gnl|echTel1|scaffold_298697 (157175-157426)
               

               
               1-353, gnl|galGal2|chrZ_random (2664200-2664475)
               

               
               1-353, gnl|hg17|chr9 (27099284-27099561)
               

               
               1-353, gnl|Hg17|chr9 (27099287-27099641)
               

               
               1-353, gnl|mm7|chr4 (94131943-94132219)
               

               
               1-353, gnl|Mm7|chr4 (94131946-94132299)
               

               
               1-353, gnl|monDom2|scaffold_19 (24958677-24958948)
               

               
               1-353, gnl|oryCun1|scaffold_210092 (6348-6625)
               

               
               1-353, gnl|panTro1|chr11 (27630362-27630639)
               

               
               1-353, gnl|rheMac2|chr15 (49985711-49985434)
               

               
               1-353, gnl|rn3|chr5 (115052444-115052721)
               

               
               1-353, gnl|xenTro1|scaffold_155 (861090-860858)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-353, gnl|bosTau2|chr8 (10498473-10498119)
               

               
               1-353, gnl|canFam2|chr11 (48309261-48309538)
               

               
               1-353, gnl|dasNov1|scaffold_13667 (16854-16587)
               

               
               1-353, gnl|echTel1|scaffold_298697 (157175-157426)
               

               
               1-353, gnl|galGal2|chrZ_random (2664200-2664475)
               

               
               1-353, gnl|hg17|chr9 (27099284-27099561)
               

               
               1-353, gnl|Hg17|chr9 (27099287-27099641)
               

               
               1-353, gnl|mm7|chr4 (94131943-94132219)
               

               
               1-353, gnl|Mm7|chr4 (94131946-94132299)
               

               
               1-353, gnl|monDom2|scaffold_19 (24958677-24958948)
               

               
               1-353, gnl|oryCun1|scaffold_210092 (6348-6625)
               

               
               1-353, gnl|panTro1|chr11 (27630362-27630639)
               

               
               1-353, gnl|rheMac2|chr15 (49985711-49985434)
               

               
               1-353, gnl|rn3|chr5 (115052444-115052721)
               

               
               1-353, gnl|xenTro1|scaffold_155 (861090-860858)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-353, gnl\|bosTau2\|chr8 (10498473-10498119)
	1-353, gnl\|canFam2\|chr11 (48309261-48309538)
	1-353, gnl\|dasNov1\|scaffold_13667 (16854-16587)
	1-353, gnl\|echTel1\|scaffold_298697 (157175-157426)
	1-353, gnl\|galGal2\|chrZ_random (2664200-2664475)
	1-353, gnl\|hg17\|chr9 (27099284-27099561)
	1-353, gnl\|Hg17\|chr9 (27099287-27099641)
	1-353, gnl\|mm7\|chr4 (94131943-94132219)
	1-353, gnl\|Mm7\|chr4 (94131946-94132299)
	1-353, gnl\|monDom2\|scaffold_19 (24958677-24958948)
	1-353, gnl\|oryCun1\|scaffold_210092 (6348-6625)
	1-353, gnl\|panTro1\|chr11 (27630362-27630639)
	1-353, gnl\|rheMac2\|chr15 (49985711-49985434)
	1-353, gnl\|rn3\|chr5 (115052444-115052721)
	1-353, gnl\|xenTro1\|scaffold_155 (861090-860858)