Non-Coding RNA Search

reep01c_g13.y1

Sequence:


               
               GCGGCGTGAGGAAGTCGGTCAGAGACCTGGCCTTTGTGAACAAGGATTTCCGAGAAAGCT
CCAGTAGGGTGGAAAAGGACATTGTCTTCTGCAGTAACAACTGCTTTGTTCTCTATTCAT
CAGCTGCCCAAGCAAAAAACTCGGAGAGCAAGGACTGCATGGCTTCGTTGCCACAGTCAC
CGGTCAGAGAGCCACCTTCCAGAGCTTTCCATCAGTACAGCACCAACATCTCCACTTTGG
ATGTGCGTTGCCTGCCGCAGTTCCAGGAGGCAGCTTCGCCCCCCGCGTCGCCTCCCATCA
CGTTCCCTCCTGCTTTTGAAGCCGCCCAGGTCGAGGCAAAGCCCGATGAGCTGAAAGTCA
CCGTCAAGTTAAAGCCTCGGCTGAGGACCGTCCACGGCGGCTTGGAGGACTGCCGGCCGA
GCGCTAAGAAGTGGCGGGGCATGAAGTGGAAGAAGTGGAGCGTCCACATCGTGGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCGTGAGGAAGTCGGTCAGAGACCTGGCCTTTGTGAACAAGGATTTCCGAGAAAGCT
CCAGTAGGGTGGAAAAGGACATTGTCTTCTGCAGTAACAACTGCTTTGTTCTCTATTCAT
CAGCTGCCCAAGCAAAAAACTCGGAGAGCAAGGACTGCATGGCTTCGTTGCCACAGTCAC
CGGTCAGAGAGCCACCTTCCAGAGCTTTCCATCAGTACAGCACCAACATCTCCACTTTGG
ATGTGCGTTGCCTGCCGCAGTTCCAGGAGGCAGCTTCGCCCCCCGCGTCGCCTCCCATCA
CGTTCCCTCCTGCTTTTGAAGCCGCCCAGGTCGAGGCAAAGCCCGATGAGCTGAAAGTCA
CCGTCAAGTTAAAGCCTCGGCTGAGGACCGTCCACGGCGGCTTGGAGGACTGCCGGCCGA
GCGCTAAGAAGTGGCGGGGCATGAAGTGGAAGAAGTGGAGCGTCCACATCGTGGTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               387-477, + strand, RNAz p=0.800657

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               387-477, + strand, RNAz p=0.800657

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               151-477, gnl|bosTau2|chr4 (64772153-64772479)
               

               
               151-477, gnl|canFam2|chr16 (18921868-18922336)
               

               
               151-477, gnl|danRer3|chr24 (5263794-5263313)
               

               
               151-477, gnl|echTel1|scaffold_321584 (77975-78456)
               

               
               151-477, gnl|fr1|chrUn (243332777-243333249)
               

               
               151-477, gnl|galGal2|chr2 (6002341-6002822)
               

               
               151-477, gnl|hg17|chr7 (151283431-151283912)
               

               
               151-477, gnl|Hg17|chr7 (151283887-151283561)
               

               
               151-477, gnl|loxAfr1|scaffold_7066 (62499-62979)
               

               
               151-477, gnl|mm7|chr5 (24325225-24325703)
               

               
               151-477, gnl|Mm7|chr5 (24325678-24325355)
               

               
               151-477, gnl|monDom2|scaffold_7 (12749004-12749485)
               

               
               151-477, gnl|oryCun1|scaffold_208340 (140880-141362)
               

               
               151-477, gnl|panTro1|chr6_random (15639103-15638622)
               

               
               151-477, gnl|rheMac2|chr3 (189094862-189095343)
               

               
               151-477, gnl|rn3|chr4 (5226419-5225941)
               

               
               151-477, gnl|tetNig1|chr15 (6468207-6467741)
               

               
               151-477, gnl|xenTro1|scaffold_57 (320909-321380)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               151-477, gnl|bosTau2|chr4 (64772153-64772479)
               

               
               151-477, gnl|canFam2|chr16 (18921868-18922336)
               

               
               151-477, gnl|danRer3|chr24 (5263794-5263313)
               

               
               151-477, gnl|echTel1|scaffold_321584 (77975-78456)
               

               
               151-477, gnl|fr1|chrUn (243332777-243333249)
               

               
               151-477, gnl|galGal2|chr2 (6002341-6002822)
               

               
               151-477, gnl|hg17|chr7 (151283431-151283912)
               

               
               151-477, gnl|Hg17|chr7 (151283887-151283561)
               

               
               151-477, gnl|loxAfr1|scaffold_7066 (62499-62979)
               

               
               151-477, gnl|mm7|chr5 (24325225-24325703)
               

               
               151-477, gnl|Mm7|chr5 (24325678-24325355)
               

               
               151-477, gnl|monDom2|scaffold_7 (12749004-12749485)
               

               
               151-477, gnl|oryCun1|scaffold_208340 (140880-141362)
               

               
               151-477, gnl|panTro1|chr6_random (15639103-15638622)
               

               
               151-477, gnl|rheMac2|chr3 (189094862-189095343)
               

               
               151-477, gnl|rn3|chr4 (5226419-5225941)
               

               
               151-477, gnl|tetNig1|chr15 (6468207-6467741)
               

               
               151-477, gnl|xenTro1|scaffold_57 (320909-321380)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	151-477, gnl\|bosTau2\|chr4 (64772153-64772479)
	151-477, gnl\|canFam2\|chr16 (18921868-18922336)
	151-477, gnl\|danRer3\|chr24 (5263794-5263313)
	151-477, gnl\|echTel1\|scaffold_321584 (77975-78456)
	151-477, gnl\|fr1\|chrUn (243332777-243333249)
	151-477, gnl\|galGal2\|chr2 (6002341-6002822)
	151-477, gnl\|hg17\|chr7 (151283431-151283912)
	151-477, gnl\|Hg17\|chr7 (151283887-151283561)
	151-477, gnl\|loxAfr1\|scaffold_7066 (62499-62979)
	151-477, gnl\|mm7\|chr5 (24325225-24325703)
	151-477, gnl\|Mm7\|chr5 (24325678-24325355)
	151-477, gnl\|monDom2\|scaffold_7 (12749004-12749485)
	151-477, gnl\|oryCun1\|scaffold_208340 (140880-141362)
	151-477, gnl\|panTro1\|chr6_random (15639103-15638622)
	151-477, gnl\|rheMac2\|chr3 (189094862-189095343)
	151-477, gnl\|rn3\|chr4 (5226419-5225941)
	151-477, gnl\|tetNig1\|chr15 (6468207-6467741)
	151-477, gnl\|xenTro1\|scaffold_57 (320909-321380)