Non-Coding RNA Search

reep02c_b18.y1

Sequence:


               
               ATTGCAAGTGCTTGACCCTCTGACCTGGAACTCTTTCTGCCCTGGGCCCTGGCTGGCTGG
TTTCCTGGACGCAAGATACGCCTTCTGGGGGCTGTGAGAGGGAGGCTGGGGGTGCCTGTG
GGGCGTGAGACCTGCGATCCTGGCCCTTCTCTCCCTCCTACTGGCTGCCCAGGGCTCTGA
AGCAGATTTTCCACAGTCCCTGGGCCTAGGCTCCTTCTTGGGCCCCAAGCTTTACGGGAA
GGGGATGGGGGACGGAGGGAAGAAGCAGCAGTGACCACCTCTACCCGACTCTAGGGATTT
GCCCCAAGGTGACCTGCCTTTGCTCCCCCGACCAGCCCAGCCCACCAGTCTGTGCCAGGG
GCCTGCCCTGCTGACTGGGCACACAGGATGGCGCCCCATTTGGAGGCCAGTGGTTGGGAC
GGGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGCAAGTGCTTGACCCTCTGACCTGGAACTCTTTCTGCCCTGGGCCCTGGCTGGCTGG
TTTCCTGGACGCAAGATACGCCTTCTGGGGGCTGTGAGAGGGAGGCTGGGGGTGCCTGTG
GGGCGTGAGACCTGCGATCCTGGCCCTTCTCTCCCTCCTACTGGCTGCCCAGGGCTCTGA
AGCAGATTTTCCACAGTCCCTGGGCCTAGGCTCCTTCTTGGGCCCCAAGCTTTACGGGAA
GGGGATGGGGGACGGAGGGAAGAAGCAGCAGTGACCACCTCTACCCGACTCTAGGGATTT
GCCCCAAGGTGACCTGCCTTTGCTCCCCCGACCAGCCCAGCCCACCAGTCTGTGCCAGGG
GCCTGCCCTGCTGACTGGGCACACAGGATGGCGCCCCATTTGGAGGCCAGTGGTTGGGAC
GGGTTG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               52-283, + strand, RNAz p=0.892598
               

               
               89-231, - strand, RNAz p=0.967755
               

               
               305-422, - strand, RNAz p=0.999587

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               52-283, + strand, RNAz p=0.892598
               

               
               89-231, - strand, RNAz p=0.967755
               

               
               305-422, - strand, RNAz p=0.999587

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_032827, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_032827, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               21-422, gnl|bosTau2|chr11 (34135687-34135312)
               

               
               21-422, gnl|canFam2|chr17 (42311909-42311083)
               

               
               21-422, gnl|echTel1|scaffold_58791 (2752-3517)
               

               
               21-422, gnl|hg17|chr2 (85925640-85926520)
               

               
               21-422, gnl|Hg17|chr2 (85926160-85926670)
               

               
               21-422, gnl|loxAfr1|scaffold_30244 (7887-8745)
               

               
               21-422, gnl|mm7|chr6 (72225110-72224332)
               

               
               21-422, gnl|Mm7|chr6 (72224669-72224275)
               

               
               21-422, gnl|oryCun1|scaffold_191940 (5546-6323)
               

               
               21-422, gnl|panTro1|chr12 (88799979-88800859)
               

               
               21-422, gnl|rheMac2|chr13 (86365071-86365932)
               

               
               21-422, gnl|rn3|chr4 (105745438-105744648)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-422, gnl|bosTau2|chr11 (34135687-34135312)
               

               
               21-422, gnl|canFam2|chr17 (42311909-42311083)
               

               
               21-422, gnl|echTel1|scaffold_58791 (2752-3517)
               

               
               21-422, gnl|hg17|chr2 (85925640-85926520)
               

               
               21-422, gnl|Hg17|chr2 (85926160-85926670)
               

               
               21-422, gnl|loxAfr1|scaffold_30244 (7887-8745)
               

               
               21-422, gnl|mm7|chr6 (72225110-72224332)
               

               
               21-422, gnl|Mm7|chr6 (72224669-72224275)
               

               
               21-422, gnl|oryCun1|scaffold_191940 (5546-6323)
               

               
               21-422, gnl|panTro1|chr12 (88799979-88800859)
               

               
               21-422, gnl|rheMac2|chr13 (86365071-86365932)
               

               
               21-422, gnl|rn3|chr4 (105745438-105744648)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	52-283, + strand, RNAz p=0.892598
	89-231, - strand, RNAz p=0.967755
	305-422, - strand, RNAz p=0.999587

	21-422, gnl\|bosTau2\|chr11 (34135687-34135312)
	21-422, gnl\|canFam2\|chr17 (42311909-42311083)
	21-422, gnl\|echTel1\|scaffold_58791 (2752-3517)
	21-422, gnl\|hg17\|chr2 (85925640-85926520)
	21-422, gnl\|Hg17\|chr2 (85926160-85926670)
	21-422, gnl\|loxAfr1\|scaffold_30244 (7887-8745)
	21-422, gnl\|mm7\|chr6 (72225110-72224332)
	21-422, gnl\|Mm7\|chr6 (72224669-72224275)
	21-422, gnl\|oryCun1\|scaffold_191940 (5546-6323)
	21-422, gnl\|panTro1\|chr12 (88799979-88800859)
	21-422, gnl\|rheMac2\|chr13 (86365071-86365932)
	21-422, gnl\|rn3\|chr4 (105745438-105744648)