Non-Coding RNA Search

reep02c_i24.y1

Sequence:


               
               TGGAGCTCTAGTTTAAAATACGTCCAAGATCCAGGTAAATTGCATTAAGTATACAAAAAC
TTTGTGTTAAGTATGCAAAAACTTAGTATAAACGTCTAGTCTCAAGAGAAAAAAAAACTT
TTCAAAAGTGAGGTAACGCTGACCCAATAGTCCTTTTTTGAGGATCTGTTTCTTTGAGGG
AAACAGGTGAGTCAGGGAATCCAAGAAAGTAAATGCTTATTCTGGATGTTCCCATCACCC
ATCAGGAATCAGAGGAGGCTGTGGTCTCAAATTCAAGACAAGTTTCCTGGTTTCTAAAGG
GAGGTAGTTACATGAACTGAACCTGGAAAATGAGGGGGGGGCAGGGCCTCCACAGCAAGA
AGCCCTCAGGACCAGCTCTTGACAGAAGGGAAGGCAGGTGTGGGGTTTGTGTAATGGGCA
GCATGTCTTCAGACTCACACAGAGGTACAGCGAATATTCACCCTAGAGCCGTGTCCCACC
TCCCCCTTGCATTATCTCTCCGTTCAGCAGAATGGTGCTATTGAAATATGGTGCTAATAT
CCAGATGGTGGCAGAACTAATATAAACATAGAGGTAGATGTACAAGTGGGCAAGTCCATA
TGCCTCTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGCTCTAGTTTAAAATACGTCCAAGATCCAGGTAAATTGCATTAAGTATACAAAAAC
TTTGTGTTAAGTATGCAAAAACTTAGTATAAACGTCTAGTCTCAAGAGAAAAAAAAACTT
TTCAAAAGTGAGGTAACGCTGACCCAATAGTCCTTTTTTGAGGATCTGTTTCTTTGAGGG
AAACAGGTGAGTCAGGGAATCCAAGAAAGTAAATGCTTATTCTGGATGTTCCCATCACCC
ATCAGGAATCAGAGGAGGCTGTGGTCTCAAATTCAAGACAAGTTTCCTGGTTTCTAAAGG
GAGGTAGTTACATGAACTGAACCTGGAAAATGAGGGGGGGGCAGGGCCTCCACAGCAAGA
AGCCCTCAGGACCAGCTCTTGACAGAAGGGAAGGCAGGTGTGGGGTTTGTGTAATGGGCA
GCATGTCTTCAGACTCACACAGAGGTACAGCGAATATTCACCCTAGAGCCGTGTCCCACC
TCCCCCTTGCATTATCTCTCCGTTCAGCAGAATGGTGCTATTGAAATATGGTGCTAATAT
CCAGATGGTGGCAGAACTAATATAAACATAGAGGTAGATGTACAAGTGGGCAAGTCCATA
TGCCTCTTCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               295-390, - strand, RNAz p=0.908213

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               295-390, - strand, RNAz p=0.908213

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               62-611, gnl|bosTau2|chr19 (20119383-20118815)
               

               
               62-611, gnl|Hg17|chr5 (33562003-33561390)
               

               
               62-611, gnl|Mm7|chr15 (11404808-11405527)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               62-611, gnl|bosTau2|chr19 (20119383-20118815)
               

               
               62-611, gnl|Hg17|chr5 (33562003-33561390)
               

               
               62-611, gnl|Mm7|chr15 (11404808-11405527)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	62-611, gnl\|bosTau2\|chr19 (20119383-20118815)
	62-611, gnl\|Hg17\|chr5 (33562003-33561390)
	62-611, gnl\|Mm7\|chr15 (11404808-11405527)