Non-Coding RNA Search

reep03c_b18.y1

Sequence:


               
               CTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGGCTGTGATCCCGTCTCCTTGT
CATGTTTCCCAGAATGGATGCTGTTTGTCTCCTCATGTCTGTGTTGAAGCTGCCAAAGAG
GGGTCTGGCCCCCATGCAGACCCTTTGTAATTGCTGACTTATCTCCCCGACTTGGGAGCT
AGGGTGCAGCTCACCTCGGGGAAGGAAATTTCATGCCTCAAAGTGATTTCACGTGACTGC
AAAGGCTGGGGGAGGGGTCTTTGCTGGGGGGGCAAGGAGCCAGGTGGGAGCTTGTCTCCC
CCTACACAGCTCCCCAGATGCCCCTCATGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGGCTGTGATCCCGTCTCCTTGT
CATGTTTCCCAGAATGGATGCTGTTTGTCTCCTCATGTCTGTGTTGAAGCTGCCAAAGAG
GGGTCTGGCCCCCATGCAGACCCTTTGTAATTGCTGACTTATCTCCCCGACTTGGGAGCT
AGGGTGCAGCTCACCTCGGGGAAGGAAATTTCATGCCTCAAAGTGATTTCACGTGACTGC
AAAGGCTGGGGGAGGGGTCTTTGCTGGGGGGGCAAGGAGCCAGGTGGGAGCTTGTCTCCC
CCTACACAGCTCCCCAGATGCCCCTCATGCCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               115-331, - strand, RNAz p=0.879376

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-331, - strand, RNAz p=0.879376

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               4-331, gnl|bosTau2|chr7 (9596025-9596358)
               

               
               4-331, gnl|canFam2|chr20 (53865991-53865607)
               

               
               4-331, gnl|echTel1|scaffold_33378 (4156-3729)
               

               
               4-331, gnl|hg17|chr19 (10193134-10193550)
               

               
               4-331, gnl|Hg17|chr19 (10193491-10193150)
               

               
               4-331, gnl|loxAfr1|scaffold_26199 (397-12)
               

               
               4-331, gnl|mm7|chr9 (20842537-20842905)
               

               
               4-331, gnl|oryCun1|scaffold_205971 (57690-58134)
               

               
               4-331, gnl|rn3|chr8 (19989893-19990263)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-331, gnl|bosTau2|chr7 (9596025-9596358)
               

               
               4-331, gnl|canFam2|chr20 (53865991-53865607)
               

               
               4-331, gnl|echTel1|scaffold_33378 (4156-3729)
               

               
               4-331, gnl|hg17|chr19 (10193134-10193550)
               

               
               4-331, gnl|Hg17|chr19 (10193491-10193150)
               

               
               4-331, gnl|loxAfr1|scaffold_26199 (397-12)
               

               
               4-331, gnl|mm7|chr9 (20842537-20842905)
               

               
               4-331, gnl|oryCun1|scaffold_205971 (57690-58134)
               

               
               4-331, gnl|rn3|chr8 (19989893-19990263)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	4-331, gnl\|bosTau2\|chr7 (9596025-9596358)
	4-331, gnl\|canFam2\|chr20 (53865991-53865607)
	4-331, gnl\|echTel1\|scaffold_33378 (4156-3729)
	4-331, gnl\|hg17\|chr19 (10193134-10193550)
	4-331, gnl\|Hg17\|chr19 (10193491-10193150)
	4-331, gnl\|loxAfr1\|scaffold_26199 (397-12)
	4-331, gnl\|mm7\|chr9 (20842537-20842905)
	4-331, gnl\|oryCun1\|scaffold_205971 (57690-58134)
	4-331, gnl\|rn3\|chr8 (19989893-19990263)