Non-Coding RNA Search

reep03c_h1.y1

Sequence:


               
               GCAAGCCCACATTTGTCAGTATTGCTTGGAGGTACTGCCCTCCCTCTATAACCTCAACGA
ACATCTTAAGCAAGTGCACGAAGCTCAGGACCCAGGTCTGATTGTTTCGGCCATGCCTGC
CATAGTCTACCAGTGCAACTTCTGCTCCGAAGTTGTCAACGACCTCAACACCCTTCAGGA
ACATATCCGATGTTCTCACGGGCTTGCGAACCCGGCGGCTAAGGATAGCAATGCTTTCTT
CTGTCCCCATTGCTACATGGGGTTTCTCACTGACTCTTCCCTCGAAGAGCATATAAGGCA
GGTCCATTGTGACCTCAGTGGCTCCCGATTTGGGTCTCCAGTGCTCGGGACTCCAAAAGA
ACCAGTAGTAGAAGTCTATTCTTGTTCCTATTGTACGAATTCACCCATATTCAACAGCGT
TCTTAAACTCAACAAGCACATCAAAGAGAATCACAAAAACATTCCCTTGGCCCTGAATTA
TATTCACAACGGGAAGAAATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAGCCCACATTTGTCAGTATTGCTTGGAGGTACTGCCCTCCCTCTATAACCTCAACGA
ACATCTTAAGCAAGTGCACGAAGCTCAGGACCCAGGTCTGATTGTTTCGGCCATGCCTGC
CATAGTCTACCAGTGCAACTTCTGCTCCGAAGTTGTCAACGACCTCAACACCCTTCAGGA
ACATATCCGATGTTCTCACGGGCTTGCGAACCCGGCGGCTAAGGATAGCAATGCTTTCTT
CTGTCCCCATTGCTACATGGGGTTTCTCACTGACTCTTCCCTCGAAGAGCATATAAGGCA
GGTCCATTGTGACCTCAGTGGCTCCCGATTTGGGTCTCCAGTGCTCGGGACTCCAAAAGA
ACCAGTAGTAGAAGTCTATTCTTGTTCCTATTGTACGAATTCACCCATATTCAACAGCGT
TCTTAAACTCAACAAGCACATCAAAGAGAATCACAAAAACATTCCCTTGGCCCTGAATTA
TATTCACAACGGGAAGAAATCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               201-360, - strand, RNAz p=0.994397

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               201-360, - strand, RNAz p=0.994397

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-502, gnl|bosTau2|chr24 (22601888-22601387)
               

               
               1-502, gnl|canFam2|chr7 (66300017-66299083)
               

               
               1-502, gnl|danRer3|chrNA (33876707-33875782)
               

               
               1-502, gnl|dasNov1|scaffold_80 (179552-180487)
               

               
               1-502, gnl|echTel1|scaffold_316775 (154965-154031)
               

               
               1-502, gnl|fr1|chrUn (125350097-125351019)
               

               
               1-502, gnl|galGal2|chr2 (102941091-102942025)
               

               
               1-502, gnl|hg17|chr18 (21059506-21060440)
               

               
               1-502, gnl|Hg17|chr18 (21060578-21060077)
               

               
               1-502, gnl|loxAfr1|scaffold_170 (78901-79835)
               

               
               1-502, gnl|mm7|chr18 (14194319-14195253)
               

               
               1-502, gnl|Mm7|chr18 (14195391-14194890)
               

               
               1-502, gnl|monDom2|scaffold_21 (41039175-41040109)
               

               
               1-502, gnl|oryCun1|scaffold_206241 (15723-16657)
               

               
               1-502, gnl|panTro1|chr17 (16987178-16988112)
               

               
               1-502, gnl|rheMac2|chr18 (18239838-18240772)
               

               
               1-502, gnl|rn3|chr18 (5016357-5017291)
               

               
               1-502, gnl|tetNig1|chr15 (6629907-6630829)
               

               
               1-502, gnl|xenTro1|scaffold_410 (850849-851768)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-502, gnl|bosTau2|chr24 (22601888-22601387)
               

               
               1-502, gnl|canFam2|chr7 (66300017-66299083)
               

               
               1-502, gnl|danRer3|chrNA (33876707-33875782)
               

               
               1-502, gnl|dasNov1|scaffold_80 (179552-180487)
               

               
               1-502, gnl|echTel1|scaffold_316775 (154965-154031)
               

               
               1-502, gnl|fr1|chrUn (125350097-125351019)
               

               
               1-502, gnl|galGal2|chr2 (102941091-102942025)
               

               
               1-502, gnl|hg17|chr18 (21059506-21060440)
               

               
               1-502, gnl|Hg17|chr18 (21060578-21060077)
               

               
               1-502, gnl|loxAfr1|scaffold_170 (78901-79835)
               

               
               1-502, gnl|mm7|chr18 (14194319-14195253)
               

               
               1-502, gnl|Mm7|chr18 (14195391-14194890)
               

               
               1-502, gnl|monDom2|scaffold_21 (41039175-41040109)
               

               
               1-502, gnl|oryCun1|scaffold_206241 (15723-16657)
               

               
               1-502, gnl|panTro1|chr17 (16987178-16988112)
               

               
               1-502, gnl|rheMac2|chr18 (18239838-18240772)
               

               
               1-502, gnl|rn3|chr18 (5016357-5017291)
               

               
               1-502, gnl|tetNig1|chr15 (6629907-6630829)
               

               
               1-502, gnl|xenTro1|scaffold_410 (850849-851768)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-502, gnl\|bosTau2\|chr24 (22601888-22601387)
	1-502, gnl\|canFam2\|chr7 (66300017-66299083)
	1-502, gnl\|danRer3\|chrNA (33876707-33875782)
	1-502, gnl\|dasNov1\|scaffold_80 (179552-180487)
	1-502, gnl\|echTel1\|scaffold_316775 (154965-154031)
	1-502, gnl\|fr1\|chrUn (125350097-125351019)
	1-502, gnl\|galGal2\|chr2 (102941091-102942025)
	1-502, gnl\|hg17\|chr18 (21059506-21060440)
	1-502, gnl\|Hg17\|chr18 (21060578-21060077)
	1-502, gnl\|loxAfr1\|scaffold_170 (78901-79835)
	1-502, gnl\|mm7\|chr18 (14194319-14195253)
	1-502, gnl\|Mm7\|chr18 (14195391-14194890)
	1-502, gnl\|monDom2\|scaffold_21 (41039175-41040109)
	1-502, gnl\|oryCun1\|scaffold_206241 (15723-16657)
	1-502, gnl\|panTro1\|chr17 (16987178-16988112)
	1-502, gnl\|rheMac2\|chr18 (18239838-18240772)
	1-502, gnl\|rn3\|chr18 (5016357-5017291)
	1-502, gnl\|tetNig1\|chr15 (6629907-6630829)
	1-502, gnl\|xenTro1\|scaffold_410 (850849-851768)