reep04c_f20.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGAAAAGAAATTTCGGCTGGACATTTTCAACGGACTTTGAGGAAGAAACCGTGAAGGAC TATGAAGCTGGCCAACTCTATGGGCTGGAGAAGTTCTGGGCCTTCTTGAAATATTCCAAA GCCAAAAATTTGGACATTGACCCCAAACTTCAAGAATACCTCGGCAAATTCCGTCGCCTC GAAGACTTCAGAGTAGATCCCCCCATGGGTGAGGAGGGCAACCACAAGCGACACCCAGTG GCATCAGGAGGTGGCAGCGGTGAGGGCAGGAAGCGGTGCCCCTCCCAGTCTTCCAGCAGG CCCTCCACCATGGTCAGCCAACCCCCCACACCACCTACCGGCCAGCCCACCCGGGAAGAT GCTAAATGGACAAGCCAGCACTCGGACACACAGACTTTGGGAAAGTGAAAAGCCCCTTAG CTCTGGGGTCTGGGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGAAAAGAAATTTCGGCTGGACATTTTCAACGGACTTTGAGGAAGAAACCGTGAAGGAC TATGAAGCTGGCCAACTCTATGGGCTGGAGAAGTTCTGGGCCTTCTTGAAATATTCCAAA GCCAAAAATTTGGACATTGACCCCAAACTTCAAGAATACCTCGGCAAATTCCGTCGCCTC GAAGACTTCAGAGTAGATCCCCCCATGGGTGAGGAGGGCAACCACAAGCGACACCCAGTG GCATCAGGAGGTGGCAGCGGTGAGGGCAGGAAGCGGTGCCCCTCCCAGTCTTCCAGCAGG CCCTCCACCATGGTCAGCCAACCCCCCACACCACCTACCGGCCAGCCCACCCGGGAAGAT GCTAAATGGACAAGCCAGCACTCGGACACACAGACTTTGGGAAAGTGAAAAGCCCCTTAG CTCTGGGGTCTGGGGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 319-437, + strand, RNAz p=0.597778 | |
| 321-424, - strand, RNAz p=0.534768 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 319-437, + strand, RNAz p=0.597778 | |
| 321-424, - strand, RNAz p=0.534768 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_033551, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 194-437, gnl|bosTau2|chr7 (44728147-44728384) | |
| 194-437, gnl|canFam2|chr4 (58198992-58198594) | |
| 194-437, gnl|canFam2|chr4 (58199013-58198811) | |
| 194-437, gnl|fr1|chrUn (186868639-186868830) | |
| 194-437, gnl|galGal2|chr13 (11020268-11019799) | |
| 194-437, gnl|galGal2|chr13 (11020286-11020093) | |
| 194-437, gnl|hg17|chr5 (154173620-154173822) | |
| 194-437, gnl|Hg17|chr5 (154173635-154173878) | |
| 194-437, gnl|hg17|chr6 (26272337-26272733) | |
| 194-437, gnl|loxAfr1|scaffold_32266 (20773-20377) | |
| 194-437, gnl|loxAfr1|scaffold_32266 (20793-20592) | |
| 194-437, gnl|mm7|chr11 (58140105-58140489) | |
| 194-437, gnl|mm7|chr11 (58140088-58140283) | |
| 194-437, gnl|Mm7|chr11 (58140099-58140340) | |
| 194-437, gnl|monDom2|scaffold_6 (51503931-51503570) | |
| 194-437, gnl|monDom2|scaffold_6 (51503956-51503759) | |
| 194-437, gnl|oryCun1|scaffold_211112 (23526-23130) | |
| 194-437, gnl|oryCun1|scaffold_211112 (23547-23345) | |
| 194-437, gnl|panTro1|chr4_random (16262826-16263028) | |
| 194-437, gnl|panTro1|chr5 (26748888-26749283) | |
| 194-437, gnl|rheMac2|chr4 (26155903-26156291) | |
| 194-437, gnl|rheMac2|chr6 (151182999-151183201) | |
| 194-437, gnl|rn3|chr10 (43688298-43688693) | |
| 194-437, gnl|rn3|chr10 (43688281-43688476) | |
| 194-437, gnl|tetNig1|chr7 (7778366-7778541) | |
| 194-437, gnl|xenTro1|scaffold_10 (706707-706370) | |
| 194-437, gnl|xenTro1|scaffold_10 (706728-706550) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 194-437, gnl|bosTau2|chr7 (44728147-44728384) | |
| 194-437, gnl|canFam2|chr4 (58198992-58198594) | |
| 194-437, gnl|canFam2|chr4 (58199013-58198811) | |
| 194-437, gnl|fr1|chrUn (186868639-186868830) | |
| 194-437, gnl|galGal2|chr13 (11020268-11019799) | |
| 194-437, gnl|galGal2|chr13 (11020286-11020093) | |
| 194-437, gnl|hg17|chr5 (154173620-154173822) | |
| 194-437, gnl|Hg17|chr5 (154173635-154173878) | |
| 194-437, gnl|hg17|chr6 (26272337-26272733) | |
| 194-437, gnl|loxAfr1|scaffold_32266 (20773-20377) | |
| 194-437, gnl|loxAfr1|scaffold_32266 (20793-20592) | |
| 194-437, gnl|mm7|chr11 (58140105-58140489) | |
| 194-437, gnl|mm7|chr11 (58140088-58140283) | |
| 194-437, gnl|Mm7|chr11 (58140099-58140340) | |
| 194-437, gnl|monDom2|scaffold_6 (51503931-51503570) | |
| 194-437, gnl|monDom2|scaffold_6 (51503956-51503759) | |
| 194-437, gnl|oryCun1|scaffold_211112 (23526-23130) | |
| 194-437, gnl|oryCun1|scaffold_211112 (23547-23345) | |
| 194-437, gnl|panTro1|chr4_random (16262826-16263028) | |
| 194-437, gnl|panTro1|chr5 (26748888-26749283) | |
| 194-437, gnl|rheMac2|chr4 (26155903-26156291) | |
| 194-437, gnl|rheMac2|chr6 (151182999-151183201) | |
| 194-437, gnl|rn3|chr10 (43688298-43688693) | |
| 194-437, gnl|rn3|chr10 (43688281-43688476) | |
| 194-437, gnl|tetNig1|chr7 (7778366-7778541) | |
| 194-437, gnl|xenTro1|scaffold_10 (706707-706370) | |
| 194-437, gnl|xenTro1|scaffold_10 (706728-706550) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |