reep04c_h18.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCGGGACTCCTTCTGTGGACAAGAAGCCTGTGTCGGCCAAGCCCAGCTCCTCTGCCCC GAGGCTGGGCCGCCTGACTACCAATGCTTCTGCCCCTGATCTGAAGAATGTCCGCTCCAA GGTCGGCTCCACGGAAAACATCAAGCATCAACCTGGAGGAGGCCGTGCCAAAGTAGAGAA AAAAACAGAGGCAGCTGCTCCAGCTCGAAAGCCTGAACCTAACGCAGTCACTAAAGCAGC CGGCCCAATTGGCAGTGCACAGAAACCACCCGCTGGGAAAGTCCAGATAGTCTCCAAAAA AGTGAGCTACAGCCACATTCAGTCCAAGTGTGGTTCCAAGGACAATATTAAGCATGTCCC TGGAGGTGGTAATGTTCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCGGGACTCCTTCTGTGGACAAGAAGCCTGTGTCGGCCAAGCCCAGCTCCTCTGCCCC GAGGCTGGGCCGCCTGACTACCAATGCTTCTGCCCCTGATCTGAAGAATGTCCGCTCCAA GGTCGGCTCCACGGAAAACATCAAGCATCAACCTGGAGGAGGCCGTGCCAAAGTAGAGAA AAAAACAGAGGCAGCTGCTCCAGCTCGAAAGCCTGAACCTAACGCAGTCACTAAAGCAGC CGGCCCAATTGGCAGTGCACAGAAACCACCCGCTGGGAAAGTCCAGATAGTCTCCAAAAA AGTGAGCTACAGCCACATTCAGTCCAAGTGTGGTTCCAAGGACAATATTAAGCATGTCCC TGGAGGTGGTAATGTTCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-120, - strand, RNAz p=0.996995 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-120, - strand, RNAz p=0.996995 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 8-105, - strand, RNAmicro p=0.957569 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-165, gnl|bosTau2|chr22 (40666226-40666062) | |
| 1-165, gnl|canFam2|chr20 (44084178-44084060) | |
| 1-165, gnl|danRer3|chr24 (32648618-32648523) | |
| 1-165, gnl|dasNov1|scaffold_23006 (12896-12801) | |
| 1-165, gnl|echTel1|scaffold_318843 (49592-49710) | |
| 1-165, gnl|fr1|chrUn (272657914-272657808) | |
| 1-165, gnl|galGal2|chr2 (284241-284143) | |
| 1-165, gnl|hg17|chr3 (47887298-47887416) | |
| 1-165, gnl|Hg17|chr3 (47887472-47887308) | |
| 1-165, gnl|loxAfr1|scaffold_8619 (72744-72862) | |
| 1-165, gnl|mm7|chr9 (109765854-109765737) | |
| 1-165, gnl|Mm7|chr9 (109765679-109765843) | |
| 1-165, gnl|monDom2|scaffold_5 (82864110-82864228) | |
| 1-165, gnl|oryCun1|scaffold_182706 (50303-50185) | |
| 1-165, gnl|panTro1|chr2 (49365086-49365204) | |
| 1-165, gnl|rheMac2|chr2 (88642807-88642689) | |
| 1-165, gnl|rn3|chr8 (114442926-114442809) | |
| 1-165, gnl|tetNig1|chr2 (1668722-1668613) | |
| 1-165, gnl|xenTro1|scaffold_647 (65093-64959) | |
| 167-282, gnl|bosTau2|chr22 (40664658-40664543) | |
| 167-282, gnl|canFam2|chr20 (44085762-44085504) | |
| 167-282, gnl|dasNov1|scaffold_16826 (39534-39782) | |
| 167-282, gnl|echTel1|scaffold_318843 (48045-48300) | |
| 167-282, gnl|galGal2|chr2 (286922-286653) | |
| 167-282, gnl|hg17|chr3 (47885579-47885837) | |
| 167-282, gnl|Hg17|chr3 (47885821-47885706) | |
| 167-282, gnl|loxAfr1|scaffold_8619 (71025-71281) | |
| 167-282, gnl|mm7|chr9 (109768125-109767871) | |
| 167-282, gnl|Mm7|chr9 (109767885-109768000) | |
| 167-282, gnl|monDom2|scaffold_5 (82861704-82861994) | |
| 167-282, gnl|oryCun1|scaffold_182706 (52077-51818) | |
| 167-282, gnl|panTro1|chr2 (49362911-49363169) | |
| 167-282, gnl|rheMac2|chr2 (88644530-88644272) | |
| 167-282, gnl|rn3|chr8 (114444993-114444740) | |
| 167-282, gnl|xenTro1|scaffold_647 (67200-66913) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-165, gnl|bosTau2|chr22 (40666226-40666062) | |
| 1-165, gnl|canFam2|chr20 (44084178-44084060) | |
| 1-165, gnl|danRer3|chr24 (32648618-32648523) | |
| 1-165, gnl|dasNov1|scaffold_23006 (12896-12801) | |
| 1-165, gnl|echTel1|scaffold_318843 (49592-49710) | |
| 1-165, gnl|fr1|chrUn (272657914-272657808) | |
| 1-165, gnl|galGal2|chr2 (284241-284143) | |
| 1-165, gnl|hg17|chr3 (47887298-47887416) | |
| 1-165, gnl|Hg17|chr3 (47887472-47887308) | |
| 1-165, gnl|loxAfr1|scaffold_8619 (72744-72862) | |
| 1-165, gnl|mm7|chr9 (109765854-109765737) | |
| 1-165, gnl|Mm7|chr9 (109765679-109765843) | |
| 1-165, gnl|monDom2|scaffold_5 (82864110-82864228) | |
| 1-165, gnl|oryCun1|scaffold_182706 (50303-50185) | |
| 1-165, gnl|panTro1|chr2 (49365086-49365204) | |
| 1-165, gnl|rheMac2|chr2 (88642807-88642689) | |
| 1-165, gnl|rn3|chr8 (114442926-114442809) | |
| 1-165, gnl|tetNig1|chr2 (1668722-1668613) | |
| 1-165, gnl|xenTro1|scaffold_647 (65093-64959) | |
| 167-282, gnl|bosTau2|chr22 (40664658-40664543) | |
| 167-282, gnl|canFam2|chr20 (44085762-44085504) | |
| 167-282, gnl|dasNov1|scaffold_16826 (39534-39782) | |
| 167-282, gnl|echTel1|scaffold_318843 (48045-48300) | |
| 167-282, gnl|galGal2|chr2 (286922-286653) | |
| 167-282, gnl|hg17|chr3 (47885579-47885837) | |
| 167-282, gnl|Hg17|chr3 (47885821-47885706) | |
| 167-282, gnl|loxAfr1|scaffold_8619 (71025-71281) | |
| 167-282, gnl|mm7|chr9 (109768125-109767871) | |
| 167-282, gnl|Mm7|chr9 (109767885-109768000) | |
| 167-282, gnl|monDom2|scaffold_5 (82861704-82861994) | |
| 167-282, gnl|oryCun1|scaffold_182706 (52077-51818) | |
| 167-282, gnl|panTro1|chr2 (49362911-49363169) | |
| 167-282, gnl|rheMac2|chr2 (88644530-88644272) | |
| 167-282, gnl|rn3|chr8 (114444993-114444740) | |
| 167-282, gnl|xenTro1|scaffold_647 (67200-66913) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |