Non-Coding RNA Search

reep06c_b4.y1

Sequence:


               
               CAGCTACAGCAGCAGCAGCAGCAGCAGCCACCTCCCCCACCACCCCAGCCACAGCCACCA
CCCCAGCAGCAGCACCAGCCACCGCCACGGCCCGTGCATATGCAGCCCATGCAGTTCCCT
ACCCATATCCAGCAGCCCCCACCTCCCCCAGGCCAGCAGCCTCCTCACCCACCCACGGGC
CAGCAGCCACCTCCGCCGCAGCCTGCCAAGCCTCAGCAAGTCATCCAACATCACCCTTCA
CCCCGGCACCACAAGTCAGACCCCTACTCAACTGGTCACCTCCGTGAAGCCCCCTCTCCG
CTTATGATACATTCCCCCCAGATGCCACAGTTCCAGAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTACAGCAGCAGCAGCAGCAGCAGCCACCTCCCCCACCACCCCAGCCACAGCCACCA
CCCCAGCAGCAGCACCAGCCACCGCCACGGCCCGTGCATATGCAGCCCATGCAGTTCCCT
ACCCATATCCAGCAGCCCCCACCTCCCCCAGGCCAGCAGCCTCCTCACCCACCCACGGGC
CAGCAGCCACCTCCGCCGCAGCCTGCCAAGCCTCAGCAAGTCATCCAACATCACCCTTCA
CCCCGGCACCACAAGTCAGACCCCTACTCAACTGGTCACCTCCGTGAAGCCCCCTCTCCG
CTTATGATACATTCCCCCCAGATGCCACAGTTCCAGAGCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               97-216, - strand, RNAz p=0.868232

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               97-216, - strand, RNAz p=0.868232

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               18-276, gnl|bosTau2|chr7 (7056191-7056449)
               

               
               18-276, gnl|canFam2|chr20 (49924894-49924707)
               

               
               18-276, gnl|danRer3|chrUn (55691841-55691662)
               

               
               18-276, gnl|fr1|chrUn (175260555-175260721)
               

               
               18-276, gnl|hg17|chr19 (15214704-15214891)
               

               
               18-276, gnl|Hg17|chr19 (15214967-15214709)
               

               
               18-276, gnl|mm7|chr17 (30392940-30393127)
               

               
               18-276, gnl|Mm7|chr17 (30393199-30392945)
               

               
               18-276, gnl|monDom2|scaffold_100 (895301-895485)
               

               
               18-276, gnl|panTro1|chr20 (15928029-15928216)
               

               
               18-276, gnl|rheMac2|chr19 (14838874-14839061)
               

               
               18-276, gnl|rn3|chr7 (12779084-12779271)
               

               
               18-276, gnl|tetNig1|chrUn_random (102662563-102662732)
               

               
               18-276, gnl|xenTro1|scaffold_115 (2261888-2262107)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-276, gnl|bosTau2|chr7 (7056191-7056449)
               

               
               18-276, gnl|canFam2|chr20 (49924894-49924707)
               

               
               18-276, gnl|danRer3|chrUn (55691841-55691662)
               

               
               18-276, gnl|fr1|chrUn (175260555-175260721)
               

               
               18-276, gnl|hg17|chr19 (15214704-15214891)
               

               
               18-276, gnl|Hg17|chr19 (15214967-15214709)
               

               
               18-276, gnl|mm7|chr17 (30392940-30393127)
               

               
               18-276, gnl|Mm7|chr17 (30393199-30392945)
               

               
               18-276, gnl|monDom2|scaffold_100 (895301-895485)
               

               
               18-276, gnl|panTro1|chr20 (15928029-15928216)
               

               
               18-276, gnl|rheMac2|chr19 (14838874-14839061)
               

               
               18-276, gnl|rn3|chr7 (12779084-12779271)
               

               
               18-276, gnl|tetNig1|chrUn_random (102662563-102662732)
               

               
               18-276, gnl|xenTro1|scaffold_115 (2261888-2262107)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	18-276, gnl\|bosTau2\|chr7 (7056191-7056449)
	18-276, gnl\|canFam2\|chr20 (49924894-49924707)
	18-276, gnl\|danRer3\|chrUn (55691841-55691662)
	18-276, gnl\|fr1\|chrUn (175260555-175260721)
	18-276, gnl\|hg17\|chr19 (15214704-15214891)
	18-276, gnl\|Hg17\|chr19 (15214967-15214709)
	18-276, gnl\|mm7\|chr17 (30392940-30393127)
	18-276, gnl\|Mm7\|chr17 (30393199-30392945)
	18-276, gnl\|monDom2\|scaffold_100 (895301-895485)
	18-276, gnl\|panTro1\|chr20 (15928029-15928216)
	18-276, gnl\|rheMac2\|chr19 (14838874-14839061)
	18-276, gnl\|rn3\|chr7 (12779084-12779271)
	18-276, gnl\|tetNig1\|chrUn_random (102662563-102662732)
	18-276, gnl\|xenTro1\|scaffold_115 (2261888-2262107)